View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_45 (Length: 310)
Name: NF3342_low_45
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 47107324 - 47107602
Alignment:
| Q |
15 |
gtgtgattttatttttggatcaaatgattattttaaaaattgcctataaaagagactgatttcaaaatttagtttctatggtgattgaaaaataagtgtg |
114 |
Q |
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| T |
47107324 |
gtgtgattttatttttggatcaaatgattattttaaaaattgcctataaaagagactgatttcaaaatttagtttctatg-tgattgaaaaataagtgtg |
47107422 |
T |
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| Q |
115 |
agaagtttcaaaacatttagtaacaaaagtaatgaatgactgatggtgcttaatatcaatttaatgtttcttaagtaatttataatcttaaacaccttca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47107423 |
agaagtttcaaaacatttagtaacaaaagtaatgaatgactgatggtgcttaatatcaatttaatgtttcttaagtaatttataatcgtaaacaccttca |
47107522 |
T |
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| Q |
215 |
gatattttgttatgagtaaactcctttaaatatggcataccaggagtaccatatatcttgaagcagttttttcatagatg |
294 |
Q |
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| T |
47107523 |
gatattttgttatgagtaaactcctttaaatatggcataccaggagtaccatatatcttgaagcagttttttcatagatg |
47107602 |
T |
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