View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_47 (Length: 308)
Name: NF3342_low_47
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 8255752 - 8256028
Alignment:
| Q |
17 |
agcagtgatgcactgtgatgttttccaatttcacgtatttctaccaatgtcatgcgctccaatcgggtcgaggcgcccccatgttgggtctgatacacta |
116 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |
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| T |
8255752 |
agcagtcatgcgctgtgatgttttccaatttcacgtatttctaccaatgtcatgcgctccaatcgggtcgaggctcccccgtgctgggtctgatacacta |
8255851 |
T |
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| Q |
117 |
caaatacgnnnnnnnnatcatatggtagctagtcatcttggaatcactcttcatatgagaaacttgtgctctagcggagaaattcattagaggttgaatt |
216 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8255852 |
caaatacgttttttttatcatatggtag----tcatcttggaatcactcttcatatgagaaacttgtgttctagcggagaaattcattagaggttgaatt |
8255947 |
T |
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| Q |
217 |
ggtacacaacagaggtgttctcttcaaaaattgttgatgcctacttgtgattcttatctttgttatatcaattatgttctt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8255948 |
ggtacacaacagaggtgttctcttcaaaaattgttgatgcctacttgtgattcttatctttgttatatcaattatgttctt |
8256028 |
T |
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