View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_48 (Length: 306)
Name: NF3342_low_48
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_48 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold1302 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 44636969 - 44636670
Alignment:
| Q |
7 |
ttaactatggcggcaccaccaacaacaacagacaggatcagcgatttacccgatgaaataatatatcacatcctctcatatttgccccctaaacaaatcg |
106 |
Q |
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| T |
44636969 |
ttaactatggcggcaccaccaacaacaacagacaggatcagcgatttacccgatgaaataatatatcacatcctctcatatttgccccccaaacaaatcg |
44636870 |
T |
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| Q |
107 |
ccctcacaagccttctctcaaagcgatggaaaccactctggcgagcaatgccaaacgcagacagaatcagtgctttaccctttgaagtactaagttgcat |
206 |
Q |
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| T |
44636869 |
ccctcacaagccttctctcaaagcgatggaaaccactctggcgagcaatgccaaatgcagacagaatcagtgctttaccctttgaagtactaagttgcat |
44636770 |
T |
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| Q |
207 |
cctatacaatttgcccaccaaacaattcttcgtcacagccattctctcatggcgctggagacgagtccttaacaaaattcttgaaaccaaccacatacat |
306 |
Q |
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| T |
44636769 |
cctatacaatttgcccaccaaacaattcttcgtcacagccattctctcatggcgctggagacgagtccttaacaaaattcttgaaaccaaccacatacat |
44636670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 33 - 268
Target Start/End: Original strand, 4140635 - 4140870
Alignment:
| Q |
33 |
aacagacaggatcagcgatttacccgatgaaataatatatcacatcctctcatatttgccccctaaacaaatcgccctcacaagccttctctcaaagcga |
132 |
Q |
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| T |
4140635 |
aacagacaggatcagcgatttaccggatgaaatactccatcacatcctctcatttttgccctcctcacaaatcgccctcacaagccttctttcaaagcga |
4140734 |
T |
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| Q |
133 |
tggaaaccactctggcgagcaatgccaaacgcagacagaatcagtgctttaccctttgaagtactaagttgcatcctatacaatttgcccaccaaacaat |
232 |
Q |
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| T |
4140735 |
tggaatccactatggctaacaatcccaaacgcagacagaatcagtgctttacgcgtcgaactattatgtcgcatcctgtctcgtttgcctacaaaacaaa |
4140834 |
T |
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| Q |
233 |
tcttcgtcacagccattctctcatggcgctggagac |
268 |
Q |
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| T |
4140835 |
tcttcgttgcatcccttctctcaaggcgctggagac |
4140870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 25127605 - 25127519
Alignment:
| Q |
99 |
acaaatcgccctcacaagccttctctcaaagcgatggaaaccactctggcgagcaatgccaaacgcagacagaatcagtgctttacc |
185 |
Q |
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| T |
25127605 |
acaaatcgctctcataagccttctatcgaaacgatggaatccactctggttagcaatgccaaacgcagacagaatcagcgctttacc |
25127519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 7016710 - 7016554
Alignment:
| Q |
111 |
cacaagccttctctcaaagcgatggaaaccactctggcgagcaatgccaaacgcagacagaatcagtgctttaccctttgaagtactaagttgcatccta |
210 |
Q |
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| T |
7016710 |
cacaagccttctctcaaagcgatggaggcgagtctggctagggatgccaaatgcagatagaatcagtattttacctgatgaactgctatgtcgcatccta |
7016611 |
T |
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| Q |
211 |
tacaatttgcccaccaaacaattcttcgtcacagccattctctcatggcgctggaga |
267 |
Q |
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| T |
7016610 |
tctcttttgcctgcaaaacaaatcatggtcacatcccttctctcaaggcgctggaga |
7016554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 7032068 - 7031912
Alignment:
| Q |
111 |
cacaagccttctctcaaagcgatggaaaccactctggcgagcaatgccaaacgcagacagaatcagtgctttaccctttgaagtactaagttgcatccta |
210 |
Q |
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| T |
7032068 |
cacaagccttctctcaaagcgatggaggcgagtctggctagggatgccaaatgcagatagaatcagtattttacctgatgaactgctatgtcgcatccta |
7031969 |
T |
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| Q |
211 |
tacaatttgcccaccaaacaattcttcgtcacagccattctctcatggcgctggaga |
267 |
Q |
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| T |
7031968 |
tctcttttgcctgcaaaacaaatcatggtcacatcccttctctcaaggcgctggaga |
7031912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 7061212 - 7061056
Alignment:
| Q |
111 |
cacaagccttctctcaaagcgatggaaaccactctggcgagcaatgccaaacgcagacagaatcagtgctttaccctttgaagtactaagttgcatccta |
210 |
Q |
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| T |
7061212 |
cacaagccttctctcaaagcgatggaggcgagtctggctagggatgccaaatgcagatagaatcagtattttacctgatgaactgctatgtcgcatccta |
7061113 |
T |
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| Q |
211 |
tacaatttgcccaccaaacaattcttcgtcacagccattctctcatggcgctggaga |
267 |
Q |
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| T |
7061112 |
tctcttttgcctgcaaaacaaatcatggtcacatcccttctctcaaggcgctggaga |
7061056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 7065696 - 7065540
Alignment:
| Q |
111 |
cacaagccttctctcaaagcgatggaaaccactctggcgagcaatgccaaacgcagacagaatcagtgctttaccctttgaagtactaagttgcatccta |
210 |
Q |
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| T |
7065696 |
cacaagccttctctcaaagcgatggaggcgagtctggctagggatgccaaatgcagatagaatcagtattttacctgatgaactgctatgtcgcatccta |
7065597 |
T |
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| Q |
211 |
tacaatttgcccaccaaacaattcttcgtcacagccattctctcatggcgctggaga |
267 |
Q |
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| T |
7065596 |
tctcttttgcctgcaaaacaaatcatggtcacatcccttctctcaaggcgctggaga |
7065540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1302 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1302
Description:
Target: scaffold1302; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 1932 - 1776
Alignment:
| Q |
111 |
cacaagccttctctcaaagcgatggaaaccactctggcgagcaatgccaaacgcagacagaatcagtgctttaccctttgaagtactaagttgcatccta |
210 |
Q |
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| T |
1932 |
cacaagccttctctcaaagcgatggaggcgagtctggctagggatgccaaatgcagatagaatcagtattttacctgatgaactgctatgtcgcatccta |
1833 |
T |
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| Q |
211 |
tacaatttgcccaccaaacaattcttcgtcacagccattctctcatggcgctggaga |
267 |
Q |
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| T |
1832 |
tctcttttgcctgcaaaacaaatcatggtcacatcccttctctcaaggcgctggaga |
1776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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