View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_49 (Length: 297)
Name: NF3342_low_49
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 38867703 - 38867443
Alignment:
| Q |
11 |
cagagaccggtatttcctgtaaaactttccctataattctcactagcataaagagggggaatttcaccagaaagctgattttttgacaggttaaagaaat |
110 |
Q |
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| T |
38867703 |
cagagaccggtatttcctgtaaaactttccctataattctcactagcataaagagggggaatttcaccagaaagctgattttttgacaggttaaagaaat |
38867604 |
T |
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| Q |
111 |
caagcttcaaattctgcaactccattggaatttcaccagaaagtaaattaccagaaagatcaagaaaattaagtgctggcaaggttcctaattcacttgg |
210 |
Q |
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| T |
38867603 |
caagcttcaaattctgcaactccattggaatttcaccggaaagtaaattaccagaaagatcaagaaaattaagtgctggcaaggttcctaattcacttgg |
38867504 |
T |
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| Q |
211 |
aatattaccaacaaacctattattagccaaatcaaggtcattgagcttcttccaatcacca |
271 |
Q |
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| T |
38867503 |
aatattaccaacaaacctattattagccaaatcaaggtcattgagcttcttccaatcacca |
38867443 |
T |
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