View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_50 (Length: 296)
Name: NF3342_low_50
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 6346755 - 6347036
Alignment:
| Q |
1 |
tagcaagttaatgttttagtagagaagtatgagctgagaattgaacttattaaccttgttgaagttgaattgaacacggtcgcatttactgctgtagttc |
100 |
Q |
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| T |
6346755 |
tagcaagttaatgttttagtagtgaattatgagctgagaattgaactaatttaccttgttgaagttgaattgaacacggttgcatatgatgttgtggttc |
6346854 |
T |
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| Q |
101 |
cttgtgccattgttcctcttactgtgagctcaacactaacttcagtattgttatgaagcatggcatccatggaaggaatagagaaaagcttgtattgata |
200 |
Q |
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| T |
6346855 |
cttgtgccattgttcctcttactgtgagctcaacacaaatttcagtattgttatgaagcatggcatccatggaaggaaaagagaaaagcttgtattgata |
6346954 |
T |
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| Q |
201 |
gtaatgagaaagtatattacaaaatgagaaattaaagttggttacaatgtgacactttaaacctatttatacaagacttaag |
282 |
Q |
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| T |
6346955 |
gtaatgagaaagtatattacaaaatgagaaattaaagttggttacaatgtgacagcttaaacctatttatacaagacttaag |
6347036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 6330494 - 6330555
Alignment:
| Q |
221 |
aaaatgagaaattaaagttggttacaatgtgacactttaaacctatttatacaagacttaag |
282 |
Q |
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| T |
6330494 |
aaaatgagaaattaaagttggttacaatgtgacaccttaaacctatttttatatgacttaag |
6330555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 5690899 - 5690866
Alignment:
| Q |
146 |
tattgttatgaagcatggcatccatggaaggaat |
179 |
Q |
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| T |
5690899 |
tattgttatgaaacatggcatccatggaaggaat |
5690866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 2427281 - 2427244
Alignment:
| Q |
234 |
aaagttggttacaatgtgacactttaaacctatttata |
271 |
Q |
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|||||||||||||||||||||| |||| |||||||||| |
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| T |
2427281 |
aaagttggttacaatgtgacaccttaagcctatttata |
2427244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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