View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_53 (Length: 285)
Name: NF3342_low_53
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 55012342 - 55012597
Alignment:
| Q |
18 |
tgttggtcaagaaacaaagataaagtatgaaatacgtaggattaatcaaacggatgatatgtgaacagtggaaacagacaacagcaggtgaaggagttaa |
117 |
Q |
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| T |
55012342 |
tgttggtcaagaaacaaagataaagtatgaaatacgtaggattaatcaaacggatgatatgtgaacagtggaaacagacaacagcaggtgaaggagttaa |
55012441 |
T |
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| Q |
118 |
atccctcaatgaaaagccaatgacagattacatgaatattgctattcaatgctctctgcaaatcccaacgaataccccaacccccacctgtcccacaact |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55012442 |
atccctcaatgaaaagccaatgacagattacatgaatattgctattcaatgctctctgcaaatcccaacgaataccccaactcccacctgtcccacaact |
55012541 |
T |
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| Q |
218 |
attaaatgtaaagaaagtttttcctttcccactagttactccatttttgtatattcat |
275 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
55012542 |
attaaatgtaaagaaag--tttcctttcccactagttactccatttttgtatattcat |
55012597 |
T |
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