View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_56 (Length: 280)
Name: NF3342_low_56
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 31806313 - 31806077
Alignment:
| Q |
18 |
gaagaagcatctgatgtgtatatttgttcccaaccatcttctatatcttgaagcatgcaagctccacctagaggctagaactattccctttgttttctac |
117 |
Q |
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| T |
31806313 |
gaagaagcatctgatgtgtatatttgttcccaagcatcttctatatcttgaagcatgcaagctccacctagaggctagaactattccttttgttttctac |
31806214 |
T |
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| Q |
118 |
ttttccaacagacaaagatgaaaaatagcaaaaagctacctactccagacccaacattagttcaaaattacatatccaaaaaatttatcaaattttcatg |
217 |
Q |
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| T |
31806213 |
ttttccaacagacaaagatgaaaaatagcaaaaagctacctactccagacccaacattagttcaaaattacatatccaaaaaatttatcaaattttcatg |
31806114 |
T |
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| Q |
218 |
cattaatgcatatttccggacagatgaattaaaccaa |
254 |
Q |
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| T |
31806113 |
cattaatgcatatttccggacagatgaattaaaccaa |
31806077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 31792967 - 31792929
Alignment:
| Q |
20 |
agaagcatctgatgtgtatatttgttcccaaccatcttc |
58 |
Q |
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|||||||| |||||||||||||||||||| ||||||||| |
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| T |
31792967 |
agaagcatgtgatgtgtatatttgttcccgaccatcttc |
31792929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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