View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3342_low_58 (Length: 277)

Name: NF3342_low_58
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3342_low_58
NF3342_low_58
[»] chr7 (29 HSPs)
chr7 (48-208)||(47039821-47039987)
chr7 (242-277)||(763842-763877)
chr7 (242-277)||(33798748-33798783)
chr7 (242-277)||(35737093-35737128)
chr7 (207-242)||(47039971-47040006)
chr7 (243-277)||(30884109-30884143)
chr7 (243-277)||(31660214-31660248)
chr7 (243-277)||(41910999-41911033)
chr7 (243-277)||(46358665-46358699)
chr7 (243-277)||(47340292-47340326)
chr7 (243-277)||(48830614-48830648)
chr7 (245-277)||(16933132-16933164)
chr7 (245-277)||(16938515-16938547)
chr7 (242-277)||(11732036-11732071)
chr7 (242-277)||(12286734-12286769)
chr7 (242-277)||(46572568-46572603)
chr7 (243-277)||(34228600-34228634)
chr7 (244-277)||(15973856-15973889)
chr7 (244-277)||(46025075-46025108)
chr7 (249-277)||(7845112-7845140)
chr7 (249-277)||(26945729-26945757)
chr7 (249-277)||(31365272-31365300)
chr7 (243-275)||(32685839-32685871)
chr7 (249-277)||(34227677-34227705)
chr7 (249-277)||(38837744-38837772)
chr7 (249-277)||(43742250-43742278)
chr7 (249-277)||(44426599-44426627)
chr7 (249-277)||(46004550-46004578)
chr7 (249-277)||(48692065-48692093)
[»] scaffold0571 (1 HSPs)
scaffold0571 (242-277)||(539-574)
[»] chr8 (20 HSPs)
chr8 (242-277)||(10237499-10237534)
chr8 (242-277)||(15227175-15227210)
chr8 (243-277)||(1149910-1149944)
chr8 (243-277)||(34633208-34633242)
chr8 (243-277)||(35301624-35301658)
chr8 (242-277)||(4835512-4835547)
chr8 (242-277)||(23397458-23397493)
chr8 (246-277)||(34647169-34647200)
chr8 (246-277)||(40022386-40022417)
chr8 (247-277)||(185880-185910)
chr8 (243-277)||(19784416-19784450)
chr8 (243-277)||(30414059-30414093)
chr8 (243-277)||(41451250-41451284)
chr8 (249-277)||(15809855-15809883)
chr8 (249-277)||(17656619-17656647)
chr8 (249-277)||(17792907-17792935)
chr8 (249-277)||(23567487-23567515)
chr8 (249-277)||(24473259-24473287)
chr8 (249-277)||(35448625-35448653)
chr8 (249-277)||(39657709-39657737)
[»] chr4 (32 HSPs)
chr4 (242-277)||(11786119-11786154)
chr4 (242-277)||(11798286-11798321)
chr4 (242-277)||(30358852-30358887)
chr4 (242-277)||(49425943-49425978)
chr4 (243-277)||(15051023-15051057)
chr4 (243-277)||(53441465-53441499)
chr4 (241-277)||(45256910-45256946)
chr4 (245-277)||(50644685-50644717)
chr4 (246-277)||(13635615-13635646)
chr4 (242-277)||(25715637-25715672)
chr4 (243-277)||(10473663-10473697)
chr4 (243-277)||(22180201-22180235)
chr4 (243-277)||(27865624-27865658)
chr4 (247-277)||(30597844-30597874)
chr4 (243-277)||(49492399-49492433)
chr4 (247-277)||(54895598-54895628)
chr4 (244-277)||(26577257-26577290)
chr4 (249-277)||(1492673-1492701)
chr4 (249-277)||(2124345-2124373)
chr4 (249-277)||(6841822-6841850)
chr4 (249-277)||(8165763-8165791)
chr4 (249-277)||(12722738-12722766)
chr4 (249-277)||(17109933-17109961)
chr4 (249-277)||(21995671-21995699)
chr4 (249-277)||(30779344-30779372)
chr4 (249-277)||(31762930-31762958)
chr4 (249-277)||(31763123-31763151)
chr4 (249-277)||(33819692-33819720)
chr4 (249-277)||(33883295-33883323)
chr4 (249-277)||(36924242-36924270)
chr4 (249-277)||(37059712-37059740)
chr4 (249-277)||(53865258-53865286)
[»] chr3 (27 HSPs)
chr3 (242-277)||(6097570-6097605)
chr3 (242-277)||(9106412-9106447)
chr3 (242-277)||(10986497-10986532)
chr3 (242-277)||(26662424-26662459)
chr3 (242-277)||(30947797-30947832)
chr3 (243-277)||(3475294-3475328)
chr3 (243-277)||(9595867-9595901)
chr3 (243-277)||(19284816-19284850)
chr3 (243-277)||(34562394-34562428)
chr3 (243-277)||(54379307-54379341)
chr3 (242-275)||(46237644-46237677)
chr3 (241-273)||(47335186-47335218)
chr3 (242-277)||(2941812-2941847)
chr3 (242-277)||(8719152-8719187)
chr3 (242-277)||(9071039-9071074)
chr3 (246-277)||(17620734-17620765)
chr3 (243-277)||(26960771-26960805)
chr3 (243-277)||(51361518-51361552)
chr3 (249-277)||(8036801-8036829)
chr3 (249-277)||(12974013-12974041)
chr3 (249-277)||(12974205-12974233)
chr3 (249-277)||(27068533-27068561)
chr3 (243-271)||(33413899-33413927)
chr3 (249-277)||(36185727-36185755)
chr3 (249-277)||(36185920-36185948)
chr3 (249-277)||(50416481-50416509)
chr3 (249-277)||(50416579-50416607)
[»] chr2 (15 HSPs)
chr2 (242-277)||(1292065-1292100)
chr2 (243-277)||(7487141-7487175)
chr2 (243-277)||(39355180-39355214)
chr2 (243-277)||(41345082-41345116)
chr2 (242-277)||(15016452-15016487)
chr2 (243-277)||(8149976-8150010)
chr2 (243-277)||(8154600-8154634)
chr2 (249-277)||(12449055-12449083)
chr2 (249-277)||(20661397-20661425)
chr2 (249-277)||(24183612-24183640)
chr2 (249-277)||(25575324-25575352)
chr2 (249-277)||(31783794-31783822)
chr2 (249-277)||(31784000-31784028)
chr2 (245-277)||(34464856-34464888)
chr2 (249-277)||(34726605-34726633)
[»] chr1 (30 HSPs)
chr1 (242-277)||(16976100-16976135)
chr1 (242-277)||(19897646-19897681)
chr1 (242-277)||(48762217-48762252)
chr1 (243-277)||(6314261-6314295)
chr1 (243-277)||(23817455-23817489)
chr1 (243-277)||(24636071-24636105)
chr1 (242-276)||(31084418-31084452)
chr1 (239-277)||(32595298-32595336)
chr1 (243-277)||(43452687-43452721)
chr1 (243-275)||(21255835-21255867)
chr1 (242-277)||(17893066-17893101)
chr1 (246-277)||(49936827-49936858)
chr1 (243-277)||(11422585-11422619)
chr1 (243-277)||(20434609-20434643)
chr1 (243-277)||(23920966-23921000)
chr1 (249-277)||(1395366-1395394)
chr1 (249-277)||(9041066-9041094)
chr1 (249-277)||(9628614-9628642)
chr1 (249-277)||(10974634-10974662)
chr1 (249-277)||(14229173-14229201)
chr1 (249-277)||(17811298-17811326)
chr1 (249-277)||(17893288-17893316)
chr1 (243-271)||(23276984-23277012)
chr1 (249-277)||(29945431-29945459)
chr1 (249-277)||(31763988-31764016)
chr1 (249-277)||(32143784-32143812)
chr1 (249-277)||(33156993-33157021)
chr1 (249-277)||(42133945-42133973)
chr1 (249-277)||(42134148-42134176)
chr1 (249-277)||(49992519-49992547)
[»] scaffold0074 (2 HSPs)
scaffold0074 (243-277)||(24419-24453)
scaffold0074 (243-277)||(44777-44811)
[»] chr6 (16 HSPs)
chr6 (243-277)||(6900948-6900982)
chr6 (242-276)||(7089228-7089262)
chr6 (243-277)||(7765419-7765453)
chr6 (243-277)||(15493319-15493353)
chr6 (243-277)||(18755658-18755692)
chr6 (243-277)||(34869950-34869984)
chr6 (242-276)||(878406-878440)
chr6 (243-277)||(1449687-1449721)
chr6 (247-277)||(20522863-20522893)
chr6 (249-277)||(10588968-10588996)
chr6 (249-277)||(14237779-14237807)
chr6 (249-277)||(19284372-19284400)
chr6 (249-277)||(21385004-21385032)
chr6 (249-277)||(22857489-22857517)
chr6 (249-277)||(25119485-25119513)
chr6 (245-277)||(30909454-30909486)
[»] chr5 (22 HSPs)
chr5 (243-277)||(3883922-3883956)
chr5 (243-277)||(13553128-13553162)
chr5 (243-277)||(14394613-14394647)
chr5 (243-277)||(14940243-14940277)
chr5 (243-277)||(26637724-26637758)
chr5 (243-277)||(37456825-37456859)
chr5 (241-277)||(23948596-23948632)
chr5 (242-277)||(23155519-23155554)
chr5 (243-277)||(15416809-15416843)
chr5 (243-277)||(30783602-30783636)
chr5 (247-276)||(25671304-25671333)
chr5 (249-277)||(3340591-3340619)
chr5 (249-277)||(11660794-11660822)
chr5 (249-277)||(11660997-11661025)
chr5 (249-277)||(15559050-15559078)
chr5 (249-277)||(20134200-20134228)
chr5 (249-277)||(20134414-20134442)
chr5 (249-277)||(22672012-22672040)
chr5 (249-277)||(22695555-22695583)
chr5 (249-277)||(25545587-25545615)
chr5 (249-277)||(35662068-35662096)
chr5 (249-277)||(39861795-39861823)
[»] scaffold1450 (1 HSPs)
scaffold1450 (249-277)||(751-779)
[»] scaffold0516 (1 HSPs)
scaffold0516 (249-277)||(1263-1291)
[»] scaffold0249 (1 HSPs)
scaffold0249 (249-277)||(23545-23573)
[»] scaffold0129 (1 HSPs)
scaffold0129 (249-277)||(20135-20163)
[»] scaffold0102 (1 HSPs)
scaffold0102 (249-277)||(33617-33645)
[»] scaffold0050 (1 HSPs)
scaffold0050 (245-277)||(20974-21006)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 47039821 - 47039987
Alignment:
Q  48 acttgaaatgagtctgagctttggaataaacaaaccataatttatctttagagttaatttttatgtaaaaagtgtatatgtcccttaa--ttgatctcga 145  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||  ||    
T  47039821 acttgaagtgagtctgagctttggaataaacaaaccataatttatctttagagttaatttttatgtaaaaagtgtatatgtcccttaatttttatcaaga 47039920  T
Q  146 agttaggatcatctgtgtgtgaatatttctttcttcacgtggttg----tgtacccttctgacaagt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  47039921 agttaggatcatctgtgtgtgaatatttctttcttcacgtggttggttatgtacccttctgacaagt 47039987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 763877 - 763842
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  763877 cgggagtggttatggtgcataaggaaatccttatgc 763842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 33798783 - 33798748
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  33798783 cgggagtggttatggtgcataaggaaatccttatgc 33798748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 35737128 - 35737093
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  35737128 cgggagtggttatggtgcataaggaaatccttatgc 35737093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 47039971 - 47040006
Alignment:
Q  207 gtacccttctgacaagtcctttgtctgtttctctgc 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  47039971 gtacccttctgacaagtcctttgtctgtttctctgc 47040006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 30884109 - 30884143
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  30884109 gggagtggttatggtgcataaggaaatccttatgc 30884143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 31660248 - 31660214
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  31660248 gggagtggttatggtgcataaggaaatccttatgc 31660214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 41910999 - 41911033
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  41910999 gggagtggttatggtgcataaggaaatccttatgc 41911033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 46358699 - 46358665
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  46358699 gggagtggttatggtgcataaggaaatccttatgc 46358665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 47340326 - 47340292
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  47340326 gggagtggttatggtgcataaggaaatccttatgc 47340292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 48830648 - 48830614
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  48830648 gggagtggttatggtgcataaggaaatccttatgc 48830614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 16933132 - 16933164
Alignment:
Q  245 gagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||    
T  16933132 gagtggttatggtgcataaggaaatccttatgc 16933164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 16938515 - 16938547
Alignment:
Q  245 gagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||    
T  16938515 gagtggttatggtgcataaggaaatccttatgc 16938547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 11732036 - 11732071
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||| |||||||||||||||||||||||||||||    
T  11732036 cgggagcggttatggtgcataaggaaatccttatgc 11732071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 12286769 - 12286734
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||| ||||||    
T  12286769 cgggagtggttatggtgcataaggaaatctttatgc 12286734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 46572568 - 46572603
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||| |||||||||||||||||||||||||||||    
T  46572568 cgggagcggttatggtgcataaggaaatccttatgc 46572603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 34228600 - 34228634
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||| ||||||||||||    
T  34228600 gggagtggttatggtgcataagaaaatccttatgc 34228634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 15973856 - 15973889
Alignment:
Q  244 ggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||| |||||||||||||||||||||||||||||    
T  15973856 ggagcggttatggtgcataaggaaatccttatgc 15973889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 46025108 - 46025075
Alignment:
Q  244 ggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||| |||||    
T  46025108 ggagtggttatggtgcataaggaaatccctatgc 46025075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 7845140 - 7845112
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  7845140 ggttatggtgcataaggaaatccttatgc 7845112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 26945757 - 26945729
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  26945757 ggttatggtgcataaggaaatccttatgc 26945729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 31365272 - 31365300
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  31365272 ggttatggtgcataaggaaatccttatgc 31365300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 32685839 - 32685871
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttat 275  Q
    ||||| |||||||||||||||||||||||||||    
T  32685839 gggagcggttatggtgcataaggaaatccttat 32685871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 34227677 - 34227705
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  34227677 ggttatggtgcataaggaaatccttatgc 34227705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 38837772 - 38837744
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  38837772 ggttatggtgcataaggaaatccttatgc 38837744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 43742250 - 43742278
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  43742250 ggttatggtgcataaggaaatccttatgc 43742278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 44426599 - 44426627
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  44426599 ggttatggtgcataaggaaatccttatgc 44426627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 46004578 - 46004550
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  46004578 ggttatggtgcataaggaaatccttatgc 46004550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 48692093 - 48692065
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  48692093 ggttatggtgcataaggaaatccttatgc 48692065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 539 - 574
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  539 cgggagtggttatggtgcataaggaaatccttatgc 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 10237534 - 10237499
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  10237534 cgggagtggttatggtgcataaggaaatccttatgc 10237499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 15227210 - 15227175
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  15227210 cgggagtggttatggtgcataaggaaatccttatgc 15227175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 1149910 - 1149944
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  1149910 gggagtggttatggtgcataaggaaatccttatgc 1149944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 34633208 - 34633242
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  34633208 gggagtggttatggtgcataaggaaatccttatgc 34633242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 35301624 - 35301658
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  35301624 gggagtggttatggtgcataaggaaatccttatgc 35301658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 4835512 - 4835547
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||| |||||||||||||||||||||||||||||    
T  4835512 cgggagcggttatggtgcataaggaaatccttatgc 4835547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 23397493 - 23397458
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23397493 cgggaatggttatggtgcataaggaaatccttatgc 23397458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 34647169 - 34647200
Alignment:
Q  246 agtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||    
T  34647169 agtggttatggtgcataaggaaatccttatgc 34647200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 40022386 - 40022417
Alignment:
Q  246 agtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||    
T  40022386 agtggttatggtgcataaggaaatccttatgc 40022417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 277
Target Start/End: Original strand, 185880 - 185910
Alignment:
Q  247 gtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||    
T  185880 gtggttatggtgcataaggaaatccttatgc 185910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 19784450 - 19784416
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||| |||||||||||||||||||||    
T  19784450 gggagtggttatgatgcataaggaaatccttatgc 19784416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 30414093 - 30414059
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||| ||||||    
T  30414093 gggagtggttatggtgcataaggaaatctttatgc 30414059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 41451284 - 41451250
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||| ||||||||||||||||||    
T  41451284 gggagtggttatggtgtataaggaaatccttatgc 41451250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 15809883 - 15809855
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  15809883 ggttatggtgcataaggaaatccttatgc 15809855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 17656619 - 17656647
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  17656619 ggttatggtgcataaggaaatccttatgc 17656647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 17792935 - 17792907
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  17792935 ggttatggtgcataaggaaatccttatgc 17792907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 23567487 - 23567515
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  23567487 ggttatggtgcataaggaaatccttatgc 23567515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 24473287 - 24473259
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  24473287 ggttatggtgcataaggaaatccttatgc 24473259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 35448653 - 35448625
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  35448653 ggttatggtgcataaggaaatccttatgc 35448625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 39657709 - 39657737
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  39657709 ggttatggtgcataaggaaatccttatgc 39657737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 11786154 - 11786119
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  11786154 cgggagtggttatggtgcataaggaaatccttatgc 11786119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 11798321 - 11798286
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  11798321 cgggagtggttatggtgcataaggaaatccttatgc 11798286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 30358887 - 30358852
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  30358887 cgggagtggttatggtgcataaggaaatccttatgc 30358852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 49425943 - 49425978
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  49425943 cgggagtggttatggtgcataaggaaatccttatgc 49425978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 15051023 - 15051057
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  15051023 gggagtggttatggtgcataaggaaatccttatgc 15051057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 53441499 - 53441465
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  53441499 gggagtggttatggtgcataaggaaatccttatgc 53441465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 45256946 - 45256910
Alignment:
Q  241 gcgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||| |||||||||||||||||||||||||||||    
T  45256946 gcgggagcggttatggtgcataaggaaatccttatgc 45256910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 50644717 - 50644685
Alignment:
Q  245 gagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||    
T  50644717 gagtggttatggtgcataaggaaatccttatgc 50644685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 13635615 - 13635646
Alignment:
Q  246 agtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||    
T  13635615 agtggttatggtgcataaggaaatccttatgc 13635646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 25715637 - 25715672
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||| |||||||||||||||||||||||||||||||    
T  25715637 cgggcgtggttatggtgcataaggaaatccttatgc 25715672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 10473697 - 10473663
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||| |||||||||||||||||||||||||||||    
T  10473697 gggagcggttatggtgcataaggaaatccttatgc 10473663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 22180201 - 22180235
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||| |||||||||||||||||||||||||||||    
T  22180201 gggagcggttatggtgcataaggaaatccttatgc 22180235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 27865624 - 27865658
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||| ||||||||||||||||||    
T  27865624 gggagtggttatggtgtataaggaaatccttatgc 27865658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 277
Target Start/End: Complemental strand, 30597874 - 30597844
Alignment:
Q  247 gtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||    
T  30597874 gtggttatggtgcataaggaaatccttatgc 30597844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 49492399 - 49492433
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||| ||||||||||||||||||||||||||||    
T  49492399 gggagtagttatggtgcataaggaaatccttatgc 49492433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 277
Target Start/End: Complemental strand, 54895628 - 54895598
Alignment:
Q  247 gtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||    
T  54895628 gtggttatggtgcataaggaaatccttatgc 54895598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 26577257 - 26577290
Alignment:
Q  244 ggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||| |||||||||||||||||||||||||||||    
T  26577257 ggagcggttatggtgcataaggaaatccttatgc 26577290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 1492673 - 1492701
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  1492673 ggttatggtgcataaggaaatccttatgc 1492701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 2124345 - 2124373
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  2124345 ggttatggtgcataaggaaatccttatgc 2124373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 6841822 - 6841850
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  6841822 ggttatggtgcataaggaaatccttatgc 6841850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 8165763 - 8165791
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  8165763 ggttatggtgcataaggaaatccttatgc 8165791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 12722738 - 12722766
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  12722738 ggttatggtgcataaggaaatccttatgc 12722766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 17109961 - 17109933
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  17109961 ggttatggtgcataaggaaatccttatgc 17109933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 21995671 - 21995699
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  21995671 ggttatggtgcataaggaaatccttatgc 21995699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 30779344 - 30779372
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  30779344 ggttatggtgcataaggaaatccttatgc 30779372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 31762930 - 31762958
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  31762930 ggttatggtgcataaggaaatccttatgc 31762958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 31763151 - 31763123
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  31763151 ggttatggtgcataaggaaatccttatgc 31763123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 33819692 - 33819720
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  33819692 ggttatggtgcataaggaaatccttatgc 33819720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 33883295 - 33883323
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  33883295 ggttatggtgcataaggaaatccttatgc 33883323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 36924242 - 36924270
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  36924242 ggttatggtgcataaggaaatccttatgc 36924270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 37059712 - 37059740
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  37059712 ggttatggtgcataaggaaatccttatgc 37059740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 53865286 - 53865258
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  53865286 ggttatggtgcataaggaaatccttatgc 53865258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 6097570 - 6097605
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  6097570 cgggagtggttatggtgcataaggaaatccttatgc 6097605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 9106447 - 9106412
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  9106447 cgggagtggttatggtgcataaggaaatccttatgc 9106412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 10986532 - 10986497
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  10986532 cgggagtggttatggtgcataaggaaatccttatgc 10986497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 26662424 - 26662459
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  26662424 cgggagtggttatggtgcataaggaaatccttatgc 26662459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 30947797 - 30947832
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  30947797 cgggagtggttatggtgcataaggaaatccttatgc 30947832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 3475294 - 3475328
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  3475294 gggagtggttatggtgcataaggaaatccttatgc 3475328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 9595867 - 9595901
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  9595867 gggagtggttatggtgcataaggaaatccttatgc 9595901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 19284850 - 19284816
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  19284850 gggagtggttatggtgcataaggaaatccttatgc 19284816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 34562394 - 34562428
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  34562394 gggagtggttatggtgcataaggaaatccttatgc 34562428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 54379341 - 54379307
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  54379341 gggagtggttatggtgcataaggaaatccttatgc 54379307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 46237644 - 46237677
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttat 275  Q
    ||||||||||||||||||||||||||||||||||    
T  46237644 cgggagtggttatggtgcataaggaaatccttat 46237677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 47335218 - 47335186
Alignment:
Q  241 gcgggagtggttatggtgcataaggaaatcctt 273  Q
    |||||||||||||||||||||||||||||||||    
T  47335218 gcgggagtggttatggtgcataaggaaatcctt 47335186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 2941812 - 2941847
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||| |||||||||||||||||||||||||||    
T  2941812 cgggagtgattatggtgcataaggaaatccttatgc 2941847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 8719187 - 8719152
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||| |||||||||||||||||||||||||||||    
T  8719187 cgggagcggttatggtgcataaggaaatccttatgc 8719152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 9071074 - 9071039
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||| |||||||||||||||||||||||||||||    
T  9071074 cgggagcggttatggtgcataaggaaatccttatgc 9071039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 17620734 - 17620765
Alignment:
Q  246 agtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||    
T  17620734 agtggttatggtgcataaggaaatccttatgc 17620765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 26960805 - 26960771
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||| ||||||    
T  26960805 gggagtggttatggtgcataaggaaatctttatgc 26960771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 51361518 - 51361552
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||| |||||||||||||||||||||||||||||    
T  51361518 gggagcggttatggtgcataaggaaatccttatgc 51361552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 8036801 - 8036829
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  8036801 ggttatggtgcataaggaaatccttatgc 8036829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 12974013 - 12974041
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  12974013 ggttatggtgcataaggaaatccttatgc 12974041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 12974233 - 12974205
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  12974233 ggttatggtgcataaggaaatccttatgc 12974205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 27068533 - 27068561
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  27068533 ggttatggtgcataaggaaatccttatgc 27068561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 33413899 - 33413927
Alignment:
Q  243 gggagtggttatggtgcataaggaaatcc 271  Q
    |||||||||||||||||||||||||||||    
T  33413899 gggagtggttatggtgcataaggaaatcc 33413927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 36185727 - 36185755
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  36185727 ggttatggtgcataaggaaatccttatgc 36185755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 36185948 - 36185920
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  36185948 ggttatggtgcataaggaaatccttatgc 36185920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 50416481 - 50416509
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  50416481 ggttatggtgcataaggaaatccttatgc 50416509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 50416607 - 50416579
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  50416607 ggttatggtgcataaggaaatccttatgc 50416579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 1292065 - 1292100
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  1292065 cgggagtggttatggtgcataaggaaatccttatgc 1292100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 7487141 - 7487175
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  7487141 gggagtggttatggtgcataaggaaatccttatgc 7487175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 39355214 - 39355180
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  39355214 gggagtggttatggtgcataaggaaatccttatgc 39355180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 41345082 - 41345116
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  41345082 gggagtggttatggtgcataaggaaatccttatgc 41345116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 15016452 - 15016487
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||| |||||||    
T  15016452 cgggagtggttatggtgcataaggaaattcttatgc 15016487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 8150010 - 8149976
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||| |||||||||||||||||||||||||    
T  8150010 gggagtggtaatggtgcataaggaaatccttatgc 8149976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 8154634 - 8154600
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||| |||||||||||||||||||||||||    
T  8154634 gggagtggtaatggtgcataaggaaatccttatgc 8154600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 12449055 - 12449083
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  12449055 ggttatggtgcataaggaaatccttatgc 12449083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 20661397 - 20661425
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  20661397 ggttatggtgcataaggaaatccttatgc 20661425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 24183640 - 24183612
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  24183640 ggttatggtgcataaggaaatccttatgc 24183612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 25575324 - 25575352
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  25575324 ggttatggtgcataaggaaatccttatgc 25575352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 31783794 - 31783822
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  31783794 ggttatggtgcataaggaaatccttatgc 31783822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 31784028 - 31784000
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  31784028 ggttatggtgcataaggaaatccttatgc 31784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 34464888 - 34464856
Alignment:
Q  245 gagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||| |||||||||||||||||||    
T  34464888 gagtggttatggtccataaggaaatccttatgc 34464856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 34726605 - 34726633
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  34726605 ggttatggtgcataaggaaatccttatgc 34726633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 16976135 - 16976100
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  16976135 cgggagtggttatggtgcataaggaaatccttatgc 16976100  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 19897646 - 19897681
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  19897646 cgggagtggttatggtgcataaggaaatccttatgc 19897681  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 48762217 - 48762252
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||||||    
T  48762217 cgggagtggttatggtgcataaggaaatccttatgc 48762252  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 6314295 - 6314261
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  6314295 gggagtggttatggtgcataaggaaatccttatgc 6314261  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 23817489 - 23817455
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  23817489 gggagtggttatggtgcataaggaaatccttatgc 23817455  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 24636105 - 24636071
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  24636105 gggagtggttatggtgcataaggaaatccttatgc 24636071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 276
Target Start/End: Complemental strand, 31084452 - 31084418
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatg 276  Q
    |||||||||||||||||||||||||||||||||||    
T  31084452 cgggagtggttatggtgcataaggaaatccttatg 31084418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 32595336 - 32595298
Alignment:
Q  239 ctgcgggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  32595336 ctgcgggcgtggttatggtgcataaggaaatccttatgc 32595298  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 43452721 - 43452687
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  43452721 gggagtggttatggtgcataaggaaatccttatgc 43452687  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 21255835 - 21255867
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttat 275  Q
    |||||||||||||||||||||||||||||||||    
T  21255835 gggagtggttatggtgcataaggaaatccttat 21255867  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 17893066 - 17893101
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||| |||||||||||||||||||||||||||||||    
T  17893066 cgggcgtggttatggtgcataaggaaatccttatgc 17893101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 49936827 - 49936858
Alignment:
Q  246 agtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||||||||    
T  49936827 agtggttatggtgcataaggaaatccttatgc 49936858  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 11422619 - 11422585
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||| |||||||||||||||||||||||||||||    
T  11422619 gggagcggttatggtgcataaggaaatccttatgc 11422585  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 20434609 - 20434643
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||| ||||||    
T  20434609 gggagtggttatggtgcataaggaaatcattatgc 20434643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 23920966 - 23921000
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||| |||||||||||||||||||||||||||||    
T  23920966 gggagcggttatggtgcataaggaaatccttatgc 23921000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 1395394 - 1395366
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  1395394 ggttatggtgcataaggaaatccttatgc 1395366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 9041094 - 9041066
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  9041094 ggttatggtgcataaggaaatccttatgc 9041066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 9628642 - 9628614
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  9628642 ggttatggtgcataaggaaatccttatgc 9628614  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 10974634 - 10974662
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  10974634 ggttatggtgcataaggaaatccttatgc 10974662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 14229173 - 14229201
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  14229173 ggttatggtgcataaggaaatccttatgc 14229201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 17811326 - 17811298
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  17811326 ggttatggtgcataaggaaatccttatgc 17811298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 17893316 - 17893288
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  17893316 ggttatggtgcataaggaaatccttatgc 17893288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 23276984 - 23277012
Alignment:
Q  243 gggagtggttatggtgcataaggaaatcc 271  Q
    |||||||||||||||||||||||||||||    
T  23276984 gggagtggttatggtgcataaggaaatcc 23277012  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 29945459 - 29945431
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  29945459 ggttatggtgcataaggaaatccttatgc 29945431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 31764016 - 31763988
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  31764016 ggttatggtgcataaggaaatccttatgc 31763988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 32143812 - 32143784
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  32143812 ggttatggtgcataaggaaatccttatgc 32143784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 33156993 - 33157021
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  33156993 ggttatggtgcataaggaaatccttatgc 33157021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 42133945 - 42133973
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  42133945 ggttatggtgcataaggaaatccttatgc 42133973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 42134176 - 42134148
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  42134176 ggttatggtgcataaggaaatccttatgc 42134148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 49992519 - 49992547
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  49992519 ggttatggtgcataaggaaatccttatgc 49992547  T

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Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 24453 - 24419
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  24453 gggagtggttatggtgcataaggaaatccttatgc 24419  T

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Target: scaffold0074; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 44777 - 44811
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||||||| |||||||    
T  44777 gggagtggttatggtgcataaggaaattcttatgc 44811  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 6900982 - 6900948
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  6900982 gggagtggttatggtgcataaggaaatccttatgc 6900948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 276
Target Start/End: Complemental strand, 7089262 - 7089228
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatg 276  Q
    |||||||||||||||||||||||||||||||||||    
T  7089262 cgggagtggttatggtgcataaggaaatccttatg 7089228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 7765453 - 7765419
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  7765453 gggagtggttatggtgcataaggaaatccttatgc 7765419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 15493353 - 15493319
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  15493353 gggagtggttatggtgcataaggaaatccttatgc 15493319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 18755658 - 18755692
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  18755658 gggagtggttatggtgcataaggaaatccttatgc 18755692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 34869950 - 34869984
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  34869950 gggagtggttatggtgcataaggaaatccttatgc 34869984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 276
Target Start/End: Complemental strand, 878440 - 878406
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatg 276  Q
    |||||| ||||||||||||||||||||||||||||    
T  878440 cgggagcggttatggtgcataaggaaatccttatg 878406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 1449721 - 1449687
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||| ||||||||||||    
T  1449721 gggagtggttatggtgcataagaaaatccttatgc 1449687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 277
Target Start/End: Complemental strand, 20522893 - 20522863
Alignment:
Q  247 gtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||    
T  20522893 gtggttatggtgcataaggaaatccttatgc 20522863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 10588996 - 10588968
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  10588996 ggttatggtgcataaggaaatccttatgc 10588968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 14237779 - 14237807
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  14237779 ggttatggtgcataaggaaatccttatgc 14237807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 19284372 - 19284400
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  19284372 ggttatggtgcataaggaaatccttatgc 19284400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 21385032 - 21385004
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  21385032 ggttatggtgcataaggaaatccttatgc 21385004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 22857489 - 22857517
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  22857489 ggttatggtgcataaggaaatccttatgc 22857517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 25119513 - 25119485
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  25119513 ggttatggtgcataaggaaatccttatgc 25119485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 30909486 - 30909454
Alignment:
Q  245 gagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||||||||||||| |||||||||    
T  30909486 gagtggttatggtgcataaggaattccttatgc 30909454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 3883922 - 3883956
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  3883922 gggagtggttatggtgcataaggaaatccttatgc 3883956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 13553162 - 13553128
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  13553162 gggagtggttatggtgcataaggaaatccttatgc 13553128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 14394647 - 14394613
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  14394647 gggagtggttatggtgcataaggaaatccttatgc 14394613  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 14940243 - 14940277
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  14940243 gggagtggttatggtgcataaggaaatccttatgc 14940277  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 26637724 - 26637758
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  26637724 gggagtggttatggtgcataaggaaatccttatgc 26637758  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 37456859 - 37456825
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||||||||    
T  37456859 gggagtggttatggtgcataaggaaatccttatgc 37456825  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 23948632 - 23948596
Alignment:
Q  241 gcgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||| ||||||||||||    
T  23948632 gcgggagtggttatggtgcataagaaaatccttatgc 23948596  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 23155519 - 23155554
Alignment:
Q  242 cgggagtggttatggtgcataaggaaatccttatgc 277  Q
    |||| |||||||||||||||||||||||||||||||    
T  23155519 cgggtgtggttatggtgcataaggaaatccttatgc 23155554  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 15416843 - 15416809
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||| |||||||||||||||||||||    
T  15416843 gggagtggttatgatgcataaggaaatccttatgc 15416809  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 30783636 - 30783602
Alignment:
Q  243 gggagtggttatggtgcataaggaaatccttatgc 277  Q
    ||||||||||||| |||||||||||||||||||||    
T  30783636 gggagtggttatgatgcataaggaaatccttatgc 30783602  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 25671333 - 25671304
Alignment:
Q  247 gtggttatggtgcataaggaaatccttatg 276  Q
    ||||||||||||||||||||||||||||||    
T  25671333 gtggttatggtgcataaggaaatccttatg 25671304  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 3340591 - 3340619
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  3340591 ggttatggtgcataaggaaatccttatgc 3340619  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 11660794 - 11660822
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  11660794 ggttatggtgcataaggaaatccttatgc 11660822  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 11661025 - 11660997
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  11661025 ggttatggtgcataaggaaatccttatgc 11660997  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 15559050 - 15559078
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  15559050 ggttatggtgcataaggaaatccttatgc 15559078  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 20134200 - 20134228
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  20134200 ggttatggtgcataaggaaatccttatgc 20134228  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 20134442 - 20134414
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  20134442 ggttatggtgcataaggaaatccttatgc 20134414  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 22672040 - 22672012
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  22672040 ggttatggtgcataaggaaatccttatgc 22672012  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 22695583 - 22695555
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  22695583 ggttatggtgcataaggaaatccttatgc 22695555  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 25545615 - 25545587
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  25545615 ggttatggtgcataaggaaatccttatgc 25545587  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 35662068 - 35662096
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  35662068 ggttatggtgcataaggaaatccttatgc 35662096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 39861823 - 39861795
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  39861823 ggttatggtgcataaggaaatccttatgc 39861795  T

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Target: scaffold1450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1450
Description:

Target: scaffold1450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 751 - 779
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  751 ggttatggtgcataaggaaatccttatgc 779  T

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Target: scaffold0516 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 1291 - 1263
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  1291 ggttatggtgcataaggaaatccttatgc 1263  T

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Target: scaffold0249 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 23545 - 23573
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  23545 ggttatggtgcataaggaaatccttatgc 23573  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 20163 - 20135
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  20163 ggttatggtgcataaggaaatccttatgc 20135  T

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Target: scaffold0102 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 33617 - 33645
Alignment:
Q  249 ggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||||||||||||    
T  33617 ggttatggtgcataaggaaatccttatgc 33645  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 20974 - 21006
Alignment:
Q  245 gagtggttatggtgcataaggaaatccttatgc 277  Q
    |||||||||||||||||||| ||||||||||||    
T  20974 gagtggttatggtgcataagaaaatccttatgc 21006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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