View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_6 (Length: 503)
Name: NF3342_low_6
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 34866359 - 34866830
Alignment:
| Q |
18 |
ctttccagttagcccttctgtaggtagcactttgtgagacatcgacaaccagtctctctgataccatttgataagtagtcgagagcctttgaagaaatct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| |
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| T |
34866359 |
ctttccagttagcccttctgtaggtagcactttgtgagacatcgacaaccagtctc--tgataccatttgataagtagtcgagagcatttggagaaatct |
34866456 |
T |
|
| Q |
118 |
cccttaaagctagctgtcaagaaggaagaacctaacaactcaaatactacccgatgctagacttaggccctcccaaaatacccaagttcctgtcaatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866457 |
cccttaaagctagctgtcaagaaggaagaacctaacaactcaaatactacccgatgctagacttaggccctcccaaaatacccaagttcctgtcaatatt |
34866556 |
T |
|
| Q |
218 |
ttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866557 |
ttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgac |
34866656 |
T |
|
| Q |
318 |
ataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866657 |
ataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaa |
34866756 |
T |
|
| Q |
418 |
ccctacaaaatcagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaatatatt |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866757 |
ccctacaaaatcagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaatatatt |
34866830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 186 - 490
Target Start/End: Complemental strand, 51857530 - 51857227
Alignment:
| Q |
186 |
cctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagct |
285 |
Q |
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||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| || |
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| T |
51857530 |
cctcccaaaatacccaagtccctgtcaatattttactcatctacttgcattaataaataagccacatataaatagtattaagggagtgtttggaagatct |
51857431 |
T |
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| Q |
286 |
tatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaag |
385 |
Q |
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|| | ||||||| |||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51857430 |
tactaacaacttttttgaatttacctgatgacacatgcccctgtcgaagtgtttggaacatgacagaacttataaaaatagcttataacatgtttaaaag |
51857331 |
T |
|
| Q |
386 |
ctgtcttaaaatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaa |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||| |||| ||||| ||||| || |||||||| |
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| T |
51857330 |
ctgtcttaaaatttggattggctctaactcaaccctacaaaatcaatttgtaaagtgaaggatatcgaccaccttctaagc-ctactttggccatattac |
51857232 |
T |
|
| Q |
486 |
tatat |
490 |
Q |
| |
|
||||| |
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|
| T |
51857231 |
tatat |
51857227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 51857638 - 51857575
Alignment:
| Q |
105 |
tttgaagaaatctc--ccttaaagctagctgtcaagaaggaagaacctaacaactcaaatacta |
166 |
Q |
| |
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|||| ||||||||| ||| ||||||||||||||||||||||||||| | | ||| |||||||| |
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|
| T |
51857638 |
tttggagaaatctctgcctaaaagctagctgtcaagaaggaagaaccaagccacttaaatacta |
51857575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 11171478 - 11171515
Alignment:
| Q |
271 |
gtgtttggaagagcttatttacaacttatttgaattta |
308 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
11171478 |
gtgtttggaagagtttatttacaacttatttgaattta |
11171515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 37579900 - 37579956
Alignment:
| Q |
395 |
aatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatc |
451 |
Q |
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||||| |||| | |||||||||||||||||||||||| | |||| ||||| |||||| |
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| T |
37579900 |
aatttagatttggtctaactcaaccctacaaaatcagcttgtaaggtgaaagatatc |
37579956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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