View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_61 (Length: 271)
Name: NF3342_low_61
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_61 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 54472125 - 54472395
Alignment:
| Q |
1 |
aacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagttgcaggtgcagcttgtataatcctccttgtcattatcctactct |
100 |
Q |
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| T |
54472125 |
aacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagttgcaggtgcagcttgtataatcctccttgtcattatcctactct |
54472224 |
T |
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| Q |
101 |
gcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactaccctactccagcacacggtatatatttttatatatctcctatttc |
200 |
Q |
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| T |
54472225 |
gcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactaccctactccagcacacggtatatatttttatatatctcctatttc |
54472324 |
T |
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| Q |
201 |
nnnnnnnaataggaatttgcaaataagcatgttatgaagtttagaatagttaatggaggaagttaattaat |
271 |
Q |
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| T |
54472325 |
tttttttaataggaatttgcaaataagcatgttatgaagtttagaatagttaatgggggaagctaattaat |
54472395 |
T |
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