View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_62 (Length: 268)
Name: NF3342_low_62
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_62 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 24991600 - 24991352
Alignment:
| Q |
20 |
tcgaaccggagactttgaggatgagca---cacttccagatc-caagcctataccacgatacattggttgttgacaaattttacattcacctaggtctca |
115 |
Q |
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| T |
24991600 |
tcgaacctgagaccttgaggaggagcaacacactcccagatctcaagcttataccacgatacattggttgctgacaaattttacattcacctaggtctcg |
24991501 |
T |
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| Q |
116 |
gtcatttacgccaaatttgttgccaataacacaacatttaattgatcttccacccttaattagtcctagcttcaacactaattataagtaaattttagac |
215 |
Q |
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| T |
24991500 |
gtcatttacaccaaatttgttgccattaacacaacatttaattgatcttccacc----attagtcctagcttcgacactaattataagtaaatttgagac |
24991405 |
T |
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| Q |
216 |
aaattgacaattataggtgttgcatccaacatcattttggtcacaagccaatt |
268 |
Q |
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| T |
24991404 |
aaattgacaattataggtgttgcatccaacatcattttggtcaccagccaatt |
24991352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 7292793 - 7292854
Alignment:
| Q |
12 |
agagagagtcgaaccggagactttgaggatgagcacacttcca-gatccaagcctataccac |
72 |
Q |
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| T |
7292793 |
agagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaataccac |
7292854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 29785295 - 29785358
Alignment:
| Q |
11 |
cagagagagtcgaaccggagactttgaggatgagcacacttccagat-ccaagcctataccacg |
73 |
Q |
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| T |
29785295 |
cagaaagaatcgaacatgagaccttgaggaggagcacacttccagatcccaagcctataccacg |
29785358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 17041008 - 17041054
Alignment:
| Q |
13 |
gagagagtcgaaccggagactttgaggatgagcacacttccagatcc |
59 |
Q |
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| T |
17041008 |
gagagaatcgaacctgagaccttgaggaggagcacacttccagatcc |
17041054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 33222452 - 33222390
Alignment:
| Q |
11 |
cagagagagtcgaaccggagactttgaggatgagcacacttccagat-ccaagcctataccac |
72 |
Q |
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| T |
33222452 |
cagagagaatcgaacctgagaccttgaggatgagtacacttccaggtcccaagccaataccac |
33222390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 4222223 - 4222161
Alignment:
| Q |
11 |
cagagagagtcgaaccggagactttgaggatgagcacacttccagat-ccaagcctataccac |
72 |
Q |
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| T |
4222223 |
cagagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaataccac |
4222161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 29563982 - 29563920
Alignment:
| Q |
11 |
cagagagagtcgaaccggagactttgaggatgagcacacttccagatc-caagcctataccac |
72 |
Q |
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| T |
29563982 |
cagagagaatcgaacctgagacttcgaggagaagcacacttccagatctcaagccaataccac |
29563920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 33017296 - 33017252
Alignment:
| Q |
11 |
cagagagagtcgaaccggagactttgaggatgagcacacttccag |
55 |
Q |
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| T |
33017296 |
cagagagaatcgaacctgagaccttgaggaggagcacacttccag |
33017252 |
T |
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