View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_66 (Length: 263)
Name: NF3342_low_66
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 39625515 - 39625720
Alignment:
| Q |
42 |
gctgctttttccttctcttctttactcaaccttcccatcgcacatcaatcttaatcaattccgatgcaatatttctctgtttaatttgtaagctaatact |
141 |
Q |
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| T |
39625515 |
gctgctttttccttctcttctttactcaacattcccatcgcacatcaatcttaatcaattccgatgcaatatttctctg-----tttgtaagctaatact |
39625609 |
T |
|
| Q |
142 |
aattttgatgaataactaggtctttcgatcttagtttaaatttccttaaatag-ttgttaggtgattactggttagttatgataacactagaacttcttt |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39625610 |
aattttgatgaataactaggtctttcgatcttagtttaaatttccttaaatagtttgttaggtgattactggttagttatgataacactagaacttcttt |
39625709 |
T |
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| Q |
241 |
ttccctatatt |
251 |
Q |
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|| |||||||| |
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| T |
39625710 |
tttcctatatt |
39625720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 39635065 - 39635270
Alignment:
| Q |
42 |
gctgctttttccttctcttctttactcaaccttcccatcgcacatcaatcttaatcaattccgatgcaatatttctctgtttaatttgtaagctaatact |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39635065 |
gctgctttttccttctcttctttactcaacattcccatcgcacatcaatcttaatcaattccgatgcaatatttctctg-----tttgtaagctaatact |
39635159 |
T |
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| Q |
142 |
aattttgatgaataactaggtctttcgatcttagtttaaatttccttaaatag-ttgttaggtgattactggttagttatgataacactagaacttcttt |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39635160 |
aattttgatgaataactaggtctttcgatcttagtttaaatttccttaaatagtttgttaggtgattactggttagttatgataacactagaacttcttt |
39635259 |
T |
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| Q |
241 |
ttccctatatt |
251 |
Q |
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|| |||||||| |
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| T |
39635260 |
tttcctatatt |
39635270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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