View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_67 (Length: 255)
Name: NF3342_low_67
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 28385651 - 28385429
Alignment:
| Q |
11 |
cagagagttgcattatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttataagtttcaccttcttcaaatgccatgg |
110 |
Q |
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| T |
28385651 |
cagagagttgtattatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttataagtttcaccttcttcaaatgccatgg |
28385552 |
T |
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| Q |
111 |
ttacttcctttccagcatagtgtgtgctcacaaacatctaagcaaataataaaaatgcatataaaaaattatatttcaacaatttgacatttcaacctaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||||||||||| |
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| T |
28385551 |
ttacttcctttccagcatagtgtgtgctcacaaacatctaagcaaatgataaaaatgcatatcaaatattatatat-----ttttgacatttcaacctaa |
28385457 |
T |
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| Q |
211 |
gagactagtcaattagatggtagagggt |
238 |
Q |
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| T |
28385456 |
cagactagtcaattaggtgggagagggt |
28385429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 28393996 - 28393851
Alignment:
| Q |
11 |
cagagagttgcattatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttataagtttcaccttcttcaaatgccatgg |
110 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||||||||| || || ||||||| ||||||||||| |
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| T |
28393996 |
cagagagttgcattatcattctcacttgaagcagtgttaaggtagacaaatacaggtccaaaaacctttttataggtctctccttcttgaaatgccatgg |
28393897 |
T |
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| Q |
111 |
ttacttcctttccagcatagtgtgtgctcacaaacatctaagcaaa |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28393896 |
ttacttcctttccagcatagtgtgtgctcacaaacatctaaacaaa |
28393851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 28410453 - 28410591
Alignment:
| Q |
11 |
cagagagttgcattatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttataagtttcaccttcttcaaatgccatgg |
110 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||| ||||| | ||| ||||| |||||||||||||| || |||||||||||| |||||| |
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| T |
28410453 |
cagagagttgcattatcattctcacttgaagcagtgttaaggtagacaaatataggcccaaacacctttttataagtctccccttcttcaaattccatgg |
28410552 |
T |
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| Q |
111 |
ttacttcctttccagcatagtgtgtgctcacaaacatct |
149 |
Q |
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|||| ||||||||||||||||| | ||||||||||||| |
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| T |
28410553 |
ttacatcctttccagcatagtggggactcacaaacatct |
28410591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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