View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_68 (Length: 254)
Name: NF3342_low_68
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 44995896 - 44996117
Alignment:
| Q |
17 |
tcacaatcaaattaaatcattcaataaaatcttcaaaacaaaagtttgagggtggaagattaaatttcaattcaacctgtgtgaaaccatccatctacta |
116 |
Q |
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| T |
44995896 |
tcacaatcaaattaaatcattcaataaaatcttcaaaacaaaagtttgagggtggaagattaaatttcaattcaacctgtgtgaaaccatccatctacta |
44995995 |
T |
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| Q |
117 |
tggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctctaagacatatctcaccacatgaaggatttccaagaggattgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44995996 |
tggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctctaagacatatctcaccacatgaaggatttccaagaggattgta |
44996095 |
T |
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| Q |
217 |
acccatctctggaacttcttct |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
44996096 |
acccatctctggaacttcttct |
44996117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 85 - 234
Target Start/End: Complemental strand, 38768284 - 38768135
Alignment:
| Q |
85 |
aattcaacctgtgtgaaaccatccatctactatggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctctaagacatatc |
184 |
Q |
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||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| || || ||||| |||| |||||| ||| ||||| | ||||||| |
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| T |
38768284 |
aattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactcaggattcttatggtaaccagtgaaaacacttttgcctctgacacatatc |
38768185 |
T |
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| Q |
185 |
tcaccacatgaaggatttccaagaggattgtaacccatctctggaacttc |
234 |
Q |
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| T |
38768184 |
tctccacatggcggagttccaagaggattgtaacccatgtctggaacttc |
38768135 |
T |
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