View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_7 (Length: 492)
Name: NF3342_low_7
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Original strand, 38781311 - 38781790
Alignment:
| Q |
7 |
gattttgccccaagatttctctttgcctttcatggctgatgccatgtgtca-ctggtcgtacatggtcaatacgtcgccgaagaaaacttctgttggcgt |
105 |
Q |
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| T |
38781311 |
gattttgccccaagatttctctttgcctttcatggctgttgccatgtgtcaactggtcgtacatggtcaatacgtcgccgaagaaaacttctgttggcgt |
38781410 |
T |
|
| Q |
106 |
gtgatatccattgcctgaaaaattgctggcatacacaaccaatcaagttatactcacaactccatcggtgcatatcagtgtggtgtgcatgtgcataaaa |
205 |
Q |
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| T |
38781411 |
gtgatatccattgcctgaaaaattgctggcatacacaaccaatcaagttatactcacatctccatcggtgcatatcagtgtggtgtgcatgtgcataaaa |
38781510 |
T |
|
| Q |
206 |
taagtgaaattcnnnnnnncccatacctcttacgtaccctccagatattttgcttcccggtcggattctagaaaccgaaacaggaaaacatgcttatgtt |
305 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38781511 |
taagtgaaattctttttttcccatacctcttacgtaccctccggatattttgcttcccggttggattctagaaaccgaaacaggaaaacatgcttatgtt |
38781610 |
T |
|
| Q |
306 |
tctggactcaaattatcatcatgagtaaaattataaggcaaccttactgttttgtcaagctgcacatgatcggataggtgaagattgatcaggacccaca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38781611 |
tctggactcaaattatcatcatgagtaaaattataaggcaaccttactgttttgtcaagctgcacatgatcggataggtgaagattgatcaggacccaca |
38781710 |
T |
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| Q |
406 |
cggtagctattactagtaggctatttggatgttgacatataataaacaatggtttgtaagtatctctatgtttcatctct |
485 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38781711 |
cggcagctattactagtaggctatttggatgttgacatataataaacaatggtttgtaagtatctctatgttttatctct |
38781790 |
T |
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