View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3342_low_75 (Length: 251)
Name: NF3342_low_75
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_75 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 44995506 - 44995748
Alignment:
| Q |
9 |
agcacagacttgaagctattcccataaacccaaaccttacacgaaaacacaacaatagtcacatacatacctatcaagagcctaaatatgaataatttta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44995506 |
agcacagacttgaagctattcccataaacccaaaccttacacgaaaacacaacaatagtcacatacatacctatcaagagcctaaatatgaataatttta |
44995605 |
T |
|
| Q |
109 |
aagtctatgaagtatcacaacgacaattttgatcgcattagctgcatttttcgacagtatatagggtcatagcataaccacagctgcactttaaaaccat |
208 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44995606 |
aagtctatgcagtatcacaacgacaattttgatcgcattagctgcatttttcgacagtatatagggtcatagcataaccacagctgcactttaaaaccat |
44995705 |
T |
|
| Q |
209 |
atgaatgaacaatactgaattttatgcttacatcttctactat |
251 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44995706 |
atgaacgaacaatactgaattttatgcttacatcttctactat |
44995748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University