View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_76 (Length: 250)
Name: NF3342_low_76
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 6173968 - 6173745
Alignment:
| Q |
17 |
tggagagaactctaactcttatt---catcttttgtgtagggagaaagtttgattaaaataaaatcagcaatgctaaatggtgcgacatatacatgcacg |
113 |
Q |
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| T |
6173968 |
tggagagaactctaactcttattaatcatcttttgtgtagggagaaagtttgattaaaataaaatcagcaatgctaaatggtgcgacatatacatgcacg |
6173869 |
T |
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| Q |
114 |
aattcttaaaacaagtgcttttatgnnnnnnngaagactgcacatcccacatctaaaatcaaaatacctaacaaaaacataatatccaccgttctacatg |
213 |
Q |
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| T |
6173868 |
aattcttaaaacaagtgcttttatgtttttttgaagactgcacatcccacatctaaaatcaaaatatctaactaaaacataatatccaccgctccacatg |
6173769 |
T |
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| Q |
214 |
ttctctttcgtaagactgcactct |
237 |
Q |
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|||||| ||||||||||||||||| |
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| T |
6173768 |
ttctctctcgtaagactgcactct |
6173745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 6142449 - 6142488
Alignment:
| Q |
76 |
aatcagcaatgctaaatggtgcgacatatacatgcacgaa |
115 |
Q |
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| T |
6142449 |
aatcagtaatgctaaatggtgcgacatatatatgcacgaa |
6142488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 7740435 - 7740276
Alignment:
| Q |
77 |
atcagcaatgctaaatggtgcgacatatacatgcacgaattcttaaaacaagtgcttttatgnnnnnnngaagactgcacatcccacatctaaaatcaaa |
176 |
Q |
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|||||||||||||||| | || || ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |||| |
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| T |
7740435 |
atcagcaatgctaaatagcgctacttatacatgcacgaattcttaaaacaagtgctct-atgttttttttaagactgcacatcccacatctaaaaacaaa |
7740337 |
T |
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| Q |
177 |
atacctaacaaaaacataatatccaccgttctacatgttctctttcgtaagactgcactct |
237 |
Q |
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||| | |||||||||||| ||||||||| || ||||||| ||||| ||||||||||||||| |
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| T |
7740336 |
atatcaaacaaaaacatagtatccaccgctccacatgttatcttttgtaagactgcactct |
7740276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 24710053 - 24710144
Alignment:
| Q |
146 |
gaagactgcacatcccacatctaaaatcaaaatacctaacaaaaacataatatccaccgttctacatgttctctttcgtaagactgcactct |
237 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| || ||||||| ||||| ||||| |||||||| |
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| T |
24710053 |
gaagactgcacatcccacatctaaaatcaaaatatcaaacaaaaacataatatccaccgctccacatgttatcttttttaagattgcactct |
24710144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 11941073 - 11941041
Alignment:
| Q |
83 |
aatgctaaatggtgcgacatatacatgcacgaa |
115 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
11941073 |
aatgctaaatggtgcgacatatatatgcacgaa |
11941041 |
T |
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