View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_77 (Length: 250)
Name: NF3342_low_77
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_77 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 11960088 - 11960328
Alignment:
| Q |
10 |
gcagagagaggagagttcttgtggttgcatggaggtggtgcgaggtggatttcatgatgttgtggaagagggaaagaaagggagaagagattgtgataat |
109 |
Q |
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| T |
11960088 |
gcagagagaggagagttcttgtggttgcatggaggtggtgcaaggtggatttcatgatgttgtggaagagggaaagaaagggagaagagattgtgataat |
11960187 |
T |
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| Q |
110 |
gatgaggaatcacttgttctctgtaaaattataatgttatattttgaagcttctcaaaaagacaataataaaccaatataatttggtgcaaaaggaaaat |
209 |
Q |
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| T |
11960188 |
gatgaggaatcacttgttctctgtaaaattataatgttatattttgaagcttctcaaaaagacaataataaaccaatataatttggtgcaaaaggaaaat |
11960287 |
T |
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| Q |
210 |
tgattgtgtttgttggtgatgaaaaaacttggaagtgtatt |
250 |
Q |
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| T |
11960288 |
tgtttgtgtttgttggtgatgaaaaaacttggaagtgtatt |
11960328 |
T |
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