View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_83 (Length: 245)
Name: NF3342_low_83
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32343838 - 32344065
Alignment:
| Q |
1 |
catgagaaaatgagcactgaatattcaaatatcaaaatctnnnnnnntaaattgaaatatttaatgtccaattgtaggggttaggtttaattgctaccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32343838 |
catgagaaaatgagcactgaatattcaaatatcaaaatgtaaaaaaataaattgaaatatttaatgtccaattgtaggggttaggtttaattgctaccac |
32343937 |
T |
|
| Q |
101 |
atacaccacacaatttaccttctcttaccataatagtccagctctatcacatgcatggtatgtgaaggtacattcgcattcatatcgaccatattgcacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32343938 |
atacaccacacaatttaccttctcttaccataatagtctagctctatcacatgcatggtatgtgaaggtacattcgcattcatatcgaccatattgcacc |
32344037 |
T |
|
| Q |
201 |
cccatagttggttaaaacttaagattat |
228 |
Q |
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|
|||||||||||||||||||||||||||| |
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|
| T |
32344038 |
cccatagttggttaaaacttaagattat |
32344065 |
T |
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