View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_84 (Length: 244)
Name: NF3342_low_84
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 1431665 - 1431454
Alignment:
| Q |
15 |
agagagtgagttgagaaaaagtggaatgaatttatagagaatgaaaggagaagaatgaaagtgtgaattaaaacgtggattgattgaaacaaagctgagg |
114 |
Q |
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| T |
1431665 |
agagagtgagttgagaaaaagtggaatgaatttatagagaatgaaaggagaagaatgaaagtgtgaattaaaacgtggattgattgaaacaaagctgagg |
1431566 |
T |
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| Q |
115 |
gcccaaatcacattcgtaacccattgtatcaacacatctttttcttttcttttgataaattattattttacatatatcttagccgcaagaatatttgata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
1431565 |
gcccaaatcacattcgtaacccattgtatcaacacatctttttcttttcttttgataaattattattttacatatatcttagacgtaagaatatttgata |
1431466 |
T |
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| Q |
215 |
tgttgagactac |
226 |
Q |
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|||||||||||| |
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| T |
1431465 |
tgttgagactac |
1431454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 33003282 - 33003156
Alignment:
| Q |
15 |
agagagtgagttgagaaaaagtggaatgaatttatagagaatgaaaggagaagaatgaaagtgtgaattaaaa-cgtggattgattgaaacaaagctgag |
113 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
33003282 |
agagagtgagttgagaaaa-gtggaacgaatttatagagaatgaaaggagaagaatgcaagtgtgaaataaaaacgtggattgattgaaacaaagctgag |
33003184 |
T |
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| Q |
114 |
ggcccaaatcacattcgtaacccattgt |
141 |
Q |
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| T |
33003183 |
ggcccaaatcacattcgtaacccattgt |
33003156 |
T |
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