View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3342_low_87 (Length: 243)

Name: NF3342_low_87
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3342_low_87
NF3342_low_87
[»] chr3 (2 HSPs)
chr3 (18-236)||(25915394-25915612)
chr3 (18-236)||(25901376-25901594)
[»] chr4 (12 HSPs)
chr4 (19-221)||(10571388-10571590)
chr4 (19-224)||(10553655-10553860)
chr4 (104-229)||(10460466-10460591)
chr4 (118-183)||(10482036-10482101)
chr4 (103-175)||(6392661-6392732)
chr4 (108-184)||(10493520-10493596)
chr4 (118-183)||(10467898-10467963)
chr4 (113-184)||(829721-829792)
chr4 (106-229)||(8447758-8447881)
chr4 (103-185)||(10464106-10464188)
chr4 (104-149)||(1110987-1111032)
chr4 (105-185)||(6388082-6388162)
[»] chr1 (2 HSPs)
chr1 (128-183)||(50645635-50645690)
chr1 (103-196)||(4366632-4366725)
[»] chr7 (1 HSPs)
chr7 (108-195)||(26256620-26256707)
[»] chr6 (1 HSPs)
chr6 (108-173)||(19746854-19746919)
[»] chr2 (1 HSPs)
chr2 (19-67)||(25376860-25376908)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 25915612 - 25915394
Alignment:
Q  18 aggtgtttacttgagtggcactattaactggttggcacttcgcaattacttctattctgactatgaatttgataatgttagtaagattactgttgagcaa 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915612 aggtgtttacttgagtggtactattaactggttggcacttcgcaattacttctattctgactatgaatttgataatgttagtaagattactgttgagcaa 25915513  T
Q  118 tatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtgg 217  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  25915512 tatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaggtgccacgtgttcagccaacaattgtgg 25915413  T
Q  218 ttttgatggactccctttg 236  Q
    |||||||||||||||||||    
T  25915412 ttttgatggactccctttg 25915394  T

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Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 25901594 - 25901376
Alignment:
Q  18 aggtgtttacttgagtggcactattaactggttggcacttcgcaattacttctattctgactatgaatttgataatgttagtaagattactgttgagcaa 117  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  25901594 aggtgtttacttgagtggtactattaactggttggcacttcacaattacttctattcagattatgaatttgataatgttagtaagattactgttgagcaa 25901495  T
Q  118 tatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtgg 217  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||    
T  25901494 tatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgccacgtgttcagccaacaattgtgg 25901395  T
Q  218 ttttgatggactccctttg 236  Q
    |||||||||||||||||||    
T  25901394 ttttgatggactccctttg 25901376  T

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Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 10571590 - 10571388
Alignment:
Q  19 ggtgtttacttgagtggcactattaactggttggcacttcgcaattacttctattctgactatgaatttgataatgttagtaagattactgttgagcaat 118  Q
    ||||| || |||||||| || ||||||||| || | |||||| |||||||||||||||| |||||| ||| |||||||||||  ||||||||||||||||    
T  10571590 ggtgtgtatttgagtggtacaattaactggatgacccttcgcgattacttctattctgattatgaaattggtaatgttagtagtattactgttgagcaat 10571491  T
Q  119 atgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggt 218  Q
    ||||||| |||||||||||||| || ||||||||||||||| | |||||||| ||||||||||||||||| ||| |  ||||||| |||||  |||||||    
T  10571490 atgtgattgtttcacttgatctctcaactgagtcatacactgaattgttgcttcctcggggttttgacgaggtgtcttgtgttcaaccaacgcttgtggt 10571391  T
Q  219 ttt 221  Q
    |||    
T  10571390 ttt 10571388  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 10553860 - 10553655
Alignment:
Q  19 ggtgtttacttgagtggcactattaactggttggcacttcgcaattacttctattctgactatgaatttgataatgttagtaagattactgttgagcaat 118  Q
    ||||| || |||| ||| || |||||||||||| | |||||| |||||||||||||||| |||||| ||| ||||||||| || |||| ||||| |||||    
T  10553860 ggtgtgtatttgaatggtacaattaactggttgacccttcgcgattacttctattctgattatgaaattggtaatgttagcaatattagtgttgcgcaat 10553761  T
Q  119 atgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggt 218  Q
    ||| ||| |||||||||||||| || ||||||||||||||| | |||||||| || |||||||||||| | ||| | |||||||| |||||  ||||||     
T  10553760 atgggattgtttcacttgatctctcaactgagtcatacactgaattgttgcttccccggggttttgacaaggtgtctcgtgttcagccaacgcttgtggg 10553661  T
Q  219 tttgat 224  Q
    ||||||    
T  10553660 tttgat 10553655  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 10460466 - 10460591
Alignment:
Q  104 ttactgttgagcaatatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttca 203  Q
    ||||||||||| |||||||||| |||||| | ||||| ||| ||||| ||||||||||| ||||| ||||||||||||| || || |||||||||  |||    
T  10460466 ttactgttgagaaatatgtgattgtttcattggatctctcctctgagacatacactcagctgttgttgcctcggggtttcgatgaggtgccacgttatca 10460565  T
Q  204 tccaacaattgtggttttgatggact 229  Q
     |||||| ||||||||||||||||||    
T  10460566 gccaacacttgtggttttgatggact 10460591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 10482036 - 10482101
Alignment:
Q  118 tatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggtttt 183  Q
    ||||||||  ||||||||||||| || |||||| |||||||||| |||||||| ||||||||||||    
T  10482036 tatgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacctcggggtttt 10482101  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 6392661 - 6392732
Alignment:
Q  103 attactgttgagcaatatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctc 175  Q
    |||||||||||||||||||||||  ||||||| | ||| ||||||||| |||||||| | |||||||||||||    
T  6392661 attactgttgagcaatatgtgattctttcactcg-tctctccactgagacatacactaaattgttgctgcctc 6392732  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 10493520 - 10493596
Alignment:
Q  108 tgttgagcaatatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttg 184  Q
    ||||||||||||||||||  ||||| | ||||| ||||||||| ||||||||||  ||||| |||||| ||||||||    
T  10493520 tgttgagcaatatgtgattctttcagtcgatctttccactgagacatacactcaactgttgttgcctcagggttttg 10493596  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 10467898 - 10467963
Alignment:
Q  118 tatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggtttt 183  Q
    ||||||||  ||||||||||||| || |||||| |||||||||| |||||||| ||||| ||||||    
T  10467898 tatgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacctcgaggtttt 10467963  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 829792 - 829721
Alignment:
Q  113 agcaatatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttg 184  Q
    ||||||||| |||  ||||||||||||| ||||||||| |||||||| | |||| |||||||| || |||||    
T  829792 agcaatatgcgattctttcacttgatctttccactgagacatacactaaattgtggctgcctcaggtttttg 829721  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 8447881 - 8447758
Alignment:
Q  106 actgttgagcaatatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatc 205  Q
    ||||||||  ||||| |||| ||||| |||| | | ||||| |||||| |||||||| ||||| |||||| ||||||||| || |||||| |   |||||    
T  8447881 actgttgatgaatatatgattgtttcgcttgctatctccaccgagtcacacactcagctgttgttgcctcagggttttgatgaggtgccatgacatcatc 8447782  T
Q  206 caacaattgtggttttgatggact 229  Q
    | ||| |||  |||||||||||||    
T  8447781 cgacacttgcagttttgatggact 8447758  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 10464106 - 10464188
Alignment:
Q  103 attactgttgagcaatatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttga 185  Q
    |||||| | ||| ||||||||||  ||||| |  |||| ||||||||| | ||||||||  ||||||||||||||||||||||    
T  10464106 attactatggagaaatatgtgattctttcaatcaatctttccactgagacgtacactcaactgttgctgcctcggggttttga 10464188  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 1111032 - 1110987
Alignment:
Q  104 ttactgttgagcaatatgtgatcgtttcacttgatctgtccactga 149  Q
    |||| ||||||||| ||||||| |||||||||||||| ||||||||    
T  1111032 ttaccgttgagcaacatgtgattgtttcacttgatctttccactga 1110987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 6388082 - 6388162
Alignment:
Q  105 tactgttgagcaatatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttga 185  Q
    ||||||| |||||| ||||||  ||||||||||||| || | ||||  ||||||||| || ||||| ||||||| ||||||    
T  6388082 tactgttaagcaatgtgtgattctttcacttgatctatcaagtgagaaatacactcaatttttgcttcctcgggattttga 6388162  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 50645690 - 50645635
Alignment:
Q  128 tttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggtttt 183  Q
    ||||||||||||| ||||| ||| ||||||||||  ||||||||||||||||||||    
T  50645690 tttcacttgatctctccaccgagacatacactcaactgttgctgcctcggggtttt 50645635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 4366725 - 4366632
Alignment:
Q  103 attactgttgagcaatatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaagtgccac 196  Q
    ||||| |||||||||| ||| || ||||| |||||||||   || ||| |||||| ||| |  ||||||||||| |||||||| ||||||||||    
T  4366725 attaccgttgagcaatttgttattgtttcgcttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgccac 4366632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 26256620 - 26256707
Alignment:
Q  108 tgttgagcaatatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaagtgcca 195  Q
    ||||||||||| ||||||  |||| |||||||| || || ||| ||||||  ||||||||||||||||  |||||||| || ||||||    
T  26256620 tgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgcca 26256707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 19746919 - 19746854
Alignment:
Q  108 tgttgagcaatatgtgatcgtttcacttgatctgtccactgagtcatacactcagttgttgctgcc 173  Q
    ||||||||||| |||||| ||||| |||||||| || |||||| ||||||| || || ||||||||    
T  19746919 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctgcc 19746854  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 25376860 - 25376908
Alignment:
Q  19 ggtgtttacttgagtggcactattaactggttggcacttcgcaattact 67  Q
    ||||| || |||||||| ||||||| ||||||||| |||||||||||||    
T  25376860 ggtgtgtatttgagtggtactattacctggttggcccttcgcaattact 25376908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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