View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_88 (Length: 243)
Name: NF3342_low_88
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_88 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 38213680 - 38213508
Alignment:
| Q |
59 |
ctcttcaaacaaaatatattcagagtagataatactcctttacaaattttgatttaaacaagttagcatagataatactcctttacgaaaaagagtcggt |
158 |
Q |
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| T |
38213680 |
ctcttcaaacaaaatatattcagagtagataatactcctttacaaattttgatttaaacaagttagcatagaaaatactcctttacgaaaaagagtcggt |
38213581 |
T |
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| Q |
159 |
aattagttgtcaataatttccatggaaaaatttaaactcttatcatcttatttgtacaactctatattttctc |
231 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213580 |
aattagttgtcaataatttccatagaaaaatttaaactcttatcatcttatttgtacaactctatattttctc |
38213508 |
T |
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