View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3342_low_98 (Length: 238)
Name: NF3342_low_98
Description: NF3342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3342_low_98 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 41447736 - 41447518
Alignment:
| Q |
18 |
tagacaaatcaaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctcat |
117 |
Q |
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| T |
41447736 |
tagacaaatcaaactagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacatagattcatctcat |
41447637 |
T |
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| Q |
118 |
atctgtgtaccaaaaacatacacagaagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggaaaccaaacataaatcaatt |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
41447636 |
atctatgtaccaaaaacatacacagaagcaaaagaatgccattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacaaaaatcaatt |
41447537 |
T |
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| Q |
218 |
ttaccaaaagtatattctc |
236 |
Q |
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||||||||||||||||||| |
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| T |
41447536 |
ttaccaaaagtatattctc |
41447518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 41457956 - 41457815
Alignment:
| Q |
18 |
tagacaaatcaaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctcat |
117 |
Q |
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|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||| |
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| T |
41457956 |
tagacaaaacaaattagcatcaaacttaacaaggtaaaggaattaaggaacttttgaat-attgaaacttagaaaccagagctacataagttcatctcat |
41457858 |
T |
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| Q |
118 |
atctgtgtaccaaaaacatacacagaagcaaaagaatgccatt |
160 |
Q |
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| T |
41457857 |
atttgtgtaccataaacataaacagaagcaaaagaatgtcatt |
41457815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 41457797 - 41457702
Alignment:
| Q |
143 |
aagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggaaaccaaacataaatcaattttaccaaaagtatattctcca |
238 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41457797 |
aagcaaaagaatgtcattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacataaatcaattttaccaaaagtatattctcca |
41457702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 16418697 - 16418838
Alignment:
| Q |
18 |
tagacaaatcaaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctcat |
117 |
Q |
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|||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||| |
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| T |
16418697 |
tagacaaaacaaatcagcatcaaacttaacaaggtaaaggaattaaggaacttttgaat-attgaaacttagaaaccagagctacataagttcatctcat |
16418795 |
T |
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| Q |
118 |
atctgtgtaccaaaaacatacacagaagcaaaagaatgccatt |
160 |
Q |
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|| ||||||||||||||||| ||||||||||||||||| |||| |
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| T |
16418796 |
atttgtgtaccaaaaacataaacagaagcaaaagaatgtcatt |
16418838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 16418858 - 16418953
Alignment:
| Q |
143 |
aagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggaaaccaaacataaatcaattttaccaaaagtatattctcca |
238 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16418858 |
aagcaaaagaacatcattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacataaatcaattttaccaaaagtatattctcca |
16418953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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