View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3343_high_2 (Length: 402)
Name: NF3343_high_2
Description: NF3343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3343_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 43 - 393
Target Start/End: Original strand, 12136840 - 12137190
Alignment:
| Q |
43 |
gttgtgatcacattttgttcaaccaaatgagattatacggcgtctaagttgtgatcacattgaaaatgagatgacgatcatgtccatgtctctctagagg |
142 |
Q |
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| T |
12136840 |
gttgtgatcacattttgttcaaccaaatgagattatacggcctctaagttgtgatcacattgaaaatgagatgacgatcatgtccatgtctctctagagg |
12136939 |
T |
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| Q |
143 |
taacctttttgattgcatattattctgttgtgctttttaaacgataagcgactaagcgttgtagtatttaatttctagcagaatttctttttaacactta |
242 |
Q |
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| T |
12136940 |
taacctttttgattgcatattattctgttgtgctttttaaacgataagcgactaagcgttgtagtatttaatttctagcagaatttctttttaacactta |
12137039 |
T |
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| Q |
243 |
atagcagtttttgtttggggaaaaccaattgttattgttatttatatatttaattatgacatttgatttcctggactatttccttcttcattattgttga |
342 |
Q |
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| T |
12137040 |
atagcagtttttgtttggggaaaaccaattgttattgttatttatatatttaattatgacatttgatttcctggactatttcctccttcattattgttga |
12137139 |
T |
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| Q |
343 |
ctgttttcttttagtcaaggataagaatcttaggtgaaatcatgatgatgt |
393 |
Q |
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| T |
12137140 |
ctgttttcttttagtcaaggataagaatcttaggtgaaatcatggtgatgt |
12137190 |
T |
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