View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3343_high_4 (Length: 374)
Name: NF3343_high_4
Description: NF3343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3343_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 358
Target Start/End: Original strand, 11945157 - 11945495
Alignment:
| Q |
20 |
aaaagatgacttgcaccattttagttggattcgataacttcaatttcaagcctactttttaaatttatttaaaaatttgttttgttgagattaatatttg |
119 |
Q |
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| T |
11945157 |
aaaagatgacttgcaccattttagttggatttgataacttcaatttcaagcctactttttaaatttatttaaaaatttgatttgttgagattaatatttg |
11945256 |
T |
|
| Q |
120 |
aaccatccgatcaagattaaatgatactttcaagcctactttttaatttatttaaaaatttgatttgttgaaattaatatttgtaccgtctgatcaagac |
219 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||| |||||| ||||||||| |
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| T |
11945257 |
aaccatccgatcaaaattaaatgatactttcaagcctactttttaatttatttaaaaaatttattagttgagattaatatttgaaccgtccgatcaagac |
11945356 |
T |
|
| Q |
220 |
taaacgatgcttatatgctaacaacaagattggatggaaaaatctctaataacaaagaacatgttttctacaacaaggaatcttacctgtttaacaacat |
319 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11945357 |
taaacgatgcttatatgctaacaacaagattgcatggaaaaatctccaataacaaagaacatgttttctacaacaaagaatcttacctgtttaacaacat |
11945456 |
T |
|
| Q |
320 |
tctctccattcactattcctccagcaacaccagcattgt |
358 |
Q |
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| T |
11945457 |
tctctccattcactattcctccagcaacaccagcattgt |
11945495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 63 - 358
Target Start/End: Complemental strand, 11926505 - 11926214
Alignment:
| Q |
63 |
tttcaagcctactttttaaatttatttaaaaatttgttttgttgagattaatatttgaaccatccgatcaagattaaatgatactttcaagcctactttt |
162 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11926505 |
tttcaagcctactttttaa-tttatttaaaaatttgatttgttgagattaatattttaaccatccgatcaagattaaatgatactctcaagcctactttt |
11926407 |
T |
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| Q |
163 |
taatttatttaaaaatttgatttgttgaaattaatatttgtaccgtctgatcaagactaaacgatgcttatatgctaacaacaagattggatggaaaaat |
262 |
Q |
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| T |
11926406 |
taatttatttaaaaatttgatttgttgagattaatatttgaaccgtccgatcaagaccaaacgatgcttatatgcta---acaagattgcatggaaaaat |
11926310 |
T |
|
| Q |
263 |
ctctaataacaaagaacatgttttctacaacaaggaatcttacctgtttaacaacattctctccattcactattcctccagcaacaccagcattgt |
358 |
Q |
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| T |
11926309 |
ctctaataacaaagaacatgttttctacaacaaggaatctgaccattttaacaacattctctccattcactattcctccagcaacaccagcattgt |
11926214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 11926632 - 11926429
Alignment:
| Q |
20 |
aaaagatgacttgcaccattttagttggattcgataacttcaatttcaagcctactttttaaatttatttaaaaatttgttttgttgagattaatatttg |
119 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11926632 |
aaaagatgacttgcaccattttagttggatttgataacttcaatttcaagcctactttttaaatttatttaaaaatttgatttgttgagattaatatttg |
11926533 |
T |
|
| Q |
120 |
aaccatccgatcaagattaaatgatactttcaagcctactttttaatttatttaaaaatttgatttgttgaaattaatatttgtaccgtctgatcaagac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||| |
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| T |
11926532 |
aaccatccgatcaagattaaatgatactttcaagcctactttttaatttatttaaaaatttgatttgttgagattaatattttaaccatccgatcaagat |
11926433 |
T |
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| Q |
220 |
taaa |
223 |
Q |
| |
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|||| |
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| T |
11926432 |
taaa |
11926429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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