View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3343_high_6 (Length: 311)
Name: NF3343_high_6
Description: NF3343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3343_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 93 - 305
Target Start/End: Original strand, 26105474 - 26105686
Alignment:
| Q |
93 |
gagaagggtaaggttatgaaatgcagtgtgattttagctaatattaattattttacagcttaatctttttgacagatggctttgacaattacatgctttc |
192 |
Q |
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| T |
26105474 |
gagaagggtaaggttatgaaatgcagtgtgattttagctaatattaattattttacagcttaatctttttgacagatggctttgacaattacatgctttc |
26105573 |
T |
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| Q |
193 |
aaaaattacaatctttcaagcgcctactactatttgatgttgtcgggtaacttctttgcaatttatctcaaagtgcaatttggaaactttggtagatcac |
292 |
Q |
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| T |
26105574 |
aaaaattacaatctttcaagcgcctacaactatttgatgttgtcgggtaacttctttgcaatttatctcaaagtgcaatttggaaactttggtagatcac |
26105673 |
T |
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| Q |
293 |
ttgttcatctctc |
305 |
Q |
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|||||| |||||| |
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| T |
26105674 |
ttgttcctctctc |
26105686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26105387 - 26105426
Alignment:
| Q |
1 |
ttgaatctttctaaaatcccaacataaacattgatatgag |
40 |
Q |
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| T |
26105387 |
ttgaatctttctaaaatcccaacataaacattgatatgag |
26105426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 39566455 - 39566566
Alignment:
| Q |
117 |
agtgtgattttagctaatattaattattttacagcttaatctttttgacagatggctttgacaattacatgctttcaaaaattacaatctttcaagcgcc |
216 |
Q |
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| T |
39566455 |
agtgtgattttagctaatattg----ttttacaacctaatctttctgacaggtggctttggcaattacatgttttcaaaaattacaatatctcaagtgct |
39566550 |
T |
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| Q |
217 |
tactactatttgatgt |
232 |
Q |
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||| |||||||||||| |
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| T |
39566551 |
tacaactatttgatgt |
39566566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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