View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3343_low_10 (Length: 249)

Name: NF3343_low_10
Description: NF3343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3343_low_10
NF3343_low_10
[»] chr8 (22 HSPs)
chr8 (8-232)||(11944826-11945051)
chr8 (8-232)||(11926759-11926984)
chr8 (75-226)||(15001485-15001636)
chr8 (36-208)||(13406888-13407061)
chr8 (36-226)||(7591382-7591573)
chr8 (149-232)||(9624310-9624392)
chr8 (36-177)||(10467043-10467185)
chr8 (75-208)||(31513536-31513669)
chr8 (36-115)||(6386555-6386635)
chr8 (36-115)||(29563272-29563352)
chr8 (75-226)||(29610990-29611141)
chr8 (36-226)||(41548597-41548788)
chr8 (36-121)||(31732043-31732129)
chr8 (36-208)||(45446434-45446607)
chr8 (75-115)||(7394860-7394900)
chr8 (36-115)||(16595195-16595275)
chr8 (148-216)||(27104051-27104119)
chr8 (36-115)||(29672369-29672449)
chr8 (36-115)||(32020047-32020127)
chr8 (36-115)||(34063107-34063187)
chr8 (79-199)||(35225685-35225805)
chr8 (36-115)||(37618438-37618518)
[»] chr4 (21 HSPs)
chr4 (75-229)||(9947951-9948105)
chr4 (75-208)||(37865775-37865908)
chr4 (75-232)||(45577595-45577756)
chr4 (75-226)||(50729455-50729606)
chr4 (46-208)||(52949712-52949875)
chr4 (46-199)||(44649104-44649258)
chr4 (36-115)||(21580008-21580088)
chr4 (36-226)||(50178405-50178597)
chr4 (46-232)||(32181255-32181442)
chr4 (193-232)||(47741409-47741448)
chr4 (148-226)||(26083434-26083512)
chr4 (46-115)||(36743712-36743782)
chr4 (36-208)||(38812502-38812675)
chr4 (75-115)||(2629975-2630015)
chr4 (36-115)||(4325773-4325853)
chr4 (75-115)||(12600908-12600948)
chr4 (36-115)||(23521862-23521942)
chr4 (36-115)||(33552866-33552946)
chr4 (156-208)||(42772891-42772943)
chr4 (36-115)||(43641081-43641161)
chr4 (36-115)||(47642515-47642595)
[»] chr1 (16 HSPs)
chr1 (75-226)||(13994070-13994221)
chr1 (64-232)||(26733571-26733740)
chr1 (46-125)||(17327745-17327825)
chr1 (36-115)||(41967955-41968035)
chr1 (156-226)||(16704835-16704905)
chr1 (75-177)||(41972939-41973041)
chr1 (161-226)||(21071728-21071793)
chr1 (36-226)||(42512765-42512956)
chr1 (46-115)||(16476261-16476331)
chr1 (36-208)||(45490888-45491061)
chr1 (36-115)||(28340409-28340489)
chr1 (36-226)||(31004120-31004311)
chr1 (141-226)||(6143981-6144066)
chr1 (36-115)||(844830-844910)
chr1 (36-115)||(16386842-16386922)
chr1 (36-115)||(42510513-42510593)
[»] chr7 (17 HSPs)
chr7 (36-208)||(44748678-44748851)
chr7 (144-226)||(1363728-1363810)
chr7 (36-113)||(29992729-29992806)
chr7 (36-216)||(40753138-40753319)
chr7 (46-208)||(21784864-21785027)
chr7 (75-218)||(30598937-30599080)
chr7 (36-208)||(47953173-47953346)
chr7 (156-226)||(38301446-38301516)
chr7 (36-208)||(18386508-18386680)
chr7 (36-115)||(10932589-10932669)
chr7 (156-208)||(11250721-11250773)
chr7 (36-115)||(11321917-11321997)
chr7 (79-199)||(22724479-22724599)
chr7 (36-115)||(32873801-32873881)
chr7 (79-199)||(34519535-34519655)
chr7 (36-115)||(46633680-46633760)
chr7 (36-115)||(47947743-47947823)
[»] chr6 (10 HSPs)
chr6 (79-226)||(32860074-32860221)
chr6 (148-224)||(9614066-9614142)
chr6 (36-226)||(10485136-10485327)
chr6 (36-208)||(24242643-24242816)
chr6 (36-208)||(34176809-34176982)
chr6 (36-115)||(11382043-11382123)
chr6 (75-115)||(10324181-10324221)
chr6 (75-115)||(11279147-11279187)
chr6 (36-115)||(17867814-17867894)
chr6 (36-115)||(17877597-17877677)
[»] chr3 (19 HSPs)
chr3 (75-226)||(3964308-3964459)
chr3 (75-226)||(19906782-19906933)
chr3 (36-226)||(33364692-33364883)
chr3 (36-208)||(25860353-25860526)
chr3 (36-115)||(21221385-21221465)
chr3 (36-226)||(31882936-31883127)
chr3 (145-226)||(22484657-22484738)
chr3 (36-208)||(50386388-50386561)
chr3 (36-115)||(1344732-1344812)
chr3 (148-225)||(32768685-32768764)
chr3 (46-115)||(3695317-3695387)
chr3 (156-226)||(41682967-41683037)
chr3 (36-208)||(38213334-38213507)
chr3 (53-208)||(3867581-3867737)
chr3 (36-115)||(4851481-4851561)
chr3 (36-115)||(28675770-28675850)
chr3 (36-115)||(47958457-47958537)
chr3 (75-115)||(50678818-50678858)
chr3 (75-115)||(53557820-53557860)
[»] chr2 (13 HSPs)
chr2 (75-226)||(41366030-41366181)
chr2 (44-114)||(26796216-26796286)
chr2 (36-115)||(30326362-30326442)
chr2 (36-208)||(7761511-7761684)
chr2 (185-230)||(17237274-17237319)
chr2 (36-208)||(44284608-44284781)
chr2 (36-115)||(16104253-16104333)
chr2 (36-208)||(17540693-17540867)
chr2 (46-115)||(40832500-40832570)
chr2 (75-208)||(7258916-7259049)
chr2 (48-115)||(9717215-9717283)
chr2 (75-115)||(16177914-16177954)
chr2 (36-115)||(26418902-26418982)
[»] scaffold0027 (1 HSPs)
scaffold0027 (53-218)||(15168-15334)
[»] chr5 (8 HSPs)
chr5 (46-115)||(27839110-27839180)
chr5 (36-208)||(21739105-21739278)
chr5 (36-115)||(7208267-7208347)
chr5 (123-199)||(35955066-35955142)
chr5 (46-115)||(39918496-39918566)
chr5 (75-115)||(700638-700678)
chr5 (36-115)||(32528694-32528774)
chr5 (75-115)||(40182483-40182523)
[»] scaffold0650 (1 HSPs)
scaffold0650 (75-226)||(1569-1720)
[»] scaffold0280 (1 HSPs)
scaffold0280 (75-226)||(13613-13764)
[»] scaffold0360 (2 HSPs)
scaffold0360 (43-115)||(13616-13689)
scaffold0360 (75-115)||(15418-15458)
[»] scaffold0169 (2 HSPs)
scaffold0169 (36-208)||(17998-18171)
scaffold0169 (36-115)||(12573-12653)
[»] scaffold0957 (1 HSPs)
scaffold0957 (36-107)||(2540-2612)
[»] scaffold0155 (1 HSPs)
scaffold0155 (36-115)||(33581-33661)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 11944826 - 11945051
Alignment:
Q  8 cgaagaatattagacaaactattatagtatttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagaca 106  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||||||    
T  11944826 cgaataatattggacaaactattatagtatttttagtcttatacaatttttgaggcaaaaaagactattttggtattttagacaaattgtacatgagaca 11944925  T
Q  107 aaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaa 206  Q
    ||||||||||||||| ||||||||||||||||||||  || ||||  ||||||||||||||| |||||||||||||||| |||||||||||||||| |||    
T  11944926 aaaagttgtagtgtggtttagtggggaactagagtttgagtttttactatgtctcttgcctctagtttgtcatctccataaaacaattttacatatcaaa 11945025  T
Q  207 cattgtacaattgaagttgtcatgtc 232  Q
    || |||||||||||||||||||||||    
T  11945026 cactgtacaattgaagttgtcatgtc 11945051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 11926984 - 11926759
Alignment:
Q  8 cgaagaatattagacaaactattatagtatttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagaca 106  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  11926984 cgaataatattgtacaaactattatagtatttttagtcttatacaatttttgaggcacaaaagactattttggtattttagacaaattgtacatgagaca 11926885  T
Q  107 aaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaa 206  Q
    ||||||| |||| || |||||||||||||||||||| ||| ||||| ||||||| |||||| |||||||| ||||||||||||||||||||| ||| |||    
T  11926884 aaaagttatagtatggtttagtggggaactagagtttcagtttttgctatgtcttttgcctgcagtttgttatctccatgaaacaattttacttatcaaa 11926785  T
Q  207 cattgtacaattgaagttgtcatgtc 232  Q
    || |||||||||||||||||||||||    
T  11926784 cactgtacaattgaagttgtcatgtc 11926759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 15001485 - 15001636
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||||| || |||||| || |||||||||||||  |||| ||| ||| || || | | || ||| ||||||| ||||| |||||||||||||    
T  15001485 tttggtattttagataacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgttctgtctattgcctccagttt 15001584  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||| | ||| ||||||| ||||||| || ||||| || |||| |||||||||    
T  15001585 gtcctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 15001636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 13407061 - 13406888
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||||||||||||  |||||| ||||||||||| || |||||| ||||||||||| || |  |||| ||| ||| || |    
T  13407061 attttttgttttatacgatttttggggcacaaaatgctattttggtattttagacaacttgtacgtgagacaaaaaattatgctgtggtttggtgaggga 13406962  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || ||||||| |||  ||||||||||||||||||| | | ||||||| ||||||| || |||||    
T  13406961 caaaaatatgagtttttgttctgttccttgcctccagtttgtcatatacctgaaacagttttacaaattaaaca 13406888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 7591573 - 7591382
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||||| ||||||  |||||| | ||||||||| || || ||| || |||||||||||||  |||| |||  || || |    
T  7591573 attttttgttttatacgatttttgggggacaaaatgctattttgatattttagacaacttatacgtgtgacaaaaagttgtgttgtggtttgctgaggca 7591474  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    | | | |  ||| ||||||  |||||||||||||||||||||| | | | ||||||| ||||||| || ||||| || |||| |||||||||    
T  7591473 caaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 7591382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 9624310 - 9624392
Alignment:
Q  149 tttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgtcatgtc 232  Q
    ||||| |||||||||| |||| ||||||| | |||  |||||||||||||| || ||||| ||||||| |||||||||||||||    
T  9624310 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaat-aaacagtgtacaactgaagttgtcatgtc 9624392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 10467043 - 10467185
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||||| ||||||  |||||| | ||||||||| || |||||| || |||||||||||||  |||| |||  || ||||    
T  10467043 attttttgttttatacgatttttgggggacaaaatgctattttgatattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttgctgaggaa 10467142  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtc 177  Q
    | | | |  ||| ||||||  ||||||||||||||||||||||    
T  10467143 caaaaatatcagtttttgtcttgtctcttgcctccagtttgtc 10467185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 31513669 - 31513536
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||||| || |||||| |  |||||||||||||  |||| ||| ||| || || | | |   || ||||||  |||| ||||||||||||||    
T  31513669 tttggtattttagacaacttgtacctaggacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagttt 31513570  T
Q  175 gtcatctccatgaaacaattttacatatgaaaca 208  Q
    ||||||| | ||||||||||||||| || |||||    
T  31513569 gtcatctacctgaaacaattttacaaatcaaaca 31513536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 6386555 - 6386635
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| ||||||||||||||||    
T  6386555 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaaagttgt 6386635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 29563352 - 29563272
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || |||||| ||||||| ||||||||||| || |||||| || |||||||||||||    
T  29563352 attttttgttttatacgatttttgagggacaaaatactattttggtattttagacaacttgtacgtgggacaaaaagttgt 29563272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 29611141 - 29610990
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||| ||||||| || || ||| || |||||||||||||  |||| ||| | | || || | | || ||| ||||||  |||| ||||||||||||||    
T  29611141 tttggtgttttagacaacttttacgtgggacaaaaagttgtgttgtggtttggcgagggacaaaaatttcagtttttgtcctgtcccttgcctccagttt 29611042  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||  | ||| ||||||| ||||||| || |||||||| |||| |||||||||    
T  29611041 gttctgtccctgaaacagttttacaaatcaaacattggacaactgaagttgt 29610990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 41548597 - 41548788
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||||| ||||||   ||||| | ||||||||| || |||||| || |||||||||||||  |||| | |  || || |    
T  41548597 attttttgttttatacgatttttgggggacaaaatgttattttgatattttagacaacttgtacgtgggacaaaaagttgtgttgtggtctgctgaggta 41548696  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    | | | |  ||| ||||||  |||||||||||||||||||||||| |   ||||||| ||||||| || ||||| || |||| |||||||||    
T  41548697 caaaaatatcagtttttgtcctgtctcttgcctccagtttgtcatgtatctgaaacagttttacaaatcaaacactggacaactgaagttgt 41548788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 31732043 - 31732129
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtg 121  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||  ||||||||||||||||| ||||    
T  31732043 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtatgtgagacaaaaagttgtactgtg 31732129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 45446434 - 45446607
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| ||||    
T  45446434 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgaggaa 45446533  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || |||| |  |||| ||||||||||||||||| | | | ||||||| ||||||| || |||||    
T  45446534 caaaaatatgagtttttatcctgtcccttgcctccagtttgtcgtgtacctgaaacagttttacaaatcaaaca 45446607  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 7394900 - 7394860
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  7394900 tttggtattttagacaacttgtacgtgagacaaaaagttgt 7394860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 16595275 - 16595195
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttg-gtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| ||||||||| |||||||| | ||||||  ||||||  |||||||||| || |||||| || |||||||||||||    
T  16595275 atttttggtcttatacgatttttggtgaacaaaaagctatttttgtattttagataacttgtacgtgggacaaaaagttgt 16595195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 27104051 - 27104119
Alignment:
Q  148 ttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaa 216  Q
    |||||| ||||| ||||||||||||||||| | | | ||||||| ||||||| || |||||||| ||||    
T  27104051 ttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacattgaacaa 27104119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 29672449 - 29672369
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  29672449 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagataacttgtacgtgggacaaaaagttgt 29672369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 32020127 - 32020047
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || |||||| ||||||| ||||||||||| || |||||| ||  ||||||||||||    
T  32020127 attttttgttttatacgatttttgagggacaaaatactattttggtattttagacaacttgtacgtggaacaaaaagttgt 32020047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 34063107 - 34063187
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  34063107 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 34063187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 35225685 - 35225805
Alignment:
Q  79 gtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagtttgtca 178  Q
    |||||||||| || |||||| || |||||||||||||  |||| ||| | | || || | | |||||| ||||||  |||| |||||||||||||||||     
T  35225685 gtattttagacaacttgtacttgtgacaaaaagttgtgatgtggtttggcgagggacaaaaattgcagtttttgtcctgtcccttgcctccagtttgtcc 35225784  T
Q  179 tctccatgaaacaattttaca 199  Q
    | ||| ||||||  |||||||    
T  35225785 tgtccctgaaactgttttaca 35225805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 37618518 - 37618438
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || ||||||||||||||||| || |||  |||||| ||||||| | | || |||||| ||||||||||||||||    
T  37618518 attttttgttttatacaatttttgggggacgaaatgctattttggtatttaaaacaacttgtacgtgagacaaaaagttgt 37618438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 9947951 - 9948105
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||  | || |||||| ||||||||||||||||| |||| ||||||| || |  ||| ||  || |||||| |||||||||||||| |||||    
T  9947951 tttggtattttgaataacttgtacgtgagacaaaaagttgtaatgtggtttagtgagggataagaattttagtttttgtcatgtctcttgcctcaagttt 9948050  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgtcat 229  Q
    ||||| | | | ||||| ||||||| || ||||||| |||||||||| |||||||    
T  9948051 gtcatgttccttaaacagttttacaaatcaaacattatacaattgaaattgtcat 9948105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 37865775 - 37865908
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||||| || ||||||||| |||||||||||||  |||||||| ||| || || | | |   || |||||| ||||||||||||||||| ||    
T  37865775 tttggtattttagacaacttgtacatgggacaaaaagttgtgttgtgatttggtgagggacaaaaatatgagtttttgtcatgtctcttgcctccagatt 37865874  T
Q  175 gtcatctccatgaaacaattttacatatgaaaca 208  Q
    ||||| | | ||||||| ||||||| || |||||    
T  37865875 gtcatgtacctgaaacagttttacaaatcaaaca 37865908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 45577756 - 45577595
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgtt---atgtctcttgcctccag 171  Q
    |||||||||||||| || ||| || || |||||||||||||  |||| ||||| | ||||| ||| || ||  |||| ||   |||||||||||||||||    
T  45577756 tttggtattttagacaacttgcacgtgggacaaaaagttgtgttgtggtttagcgaggaacaagaatttcatttttttttgtcatgtctcttgcctccag 45577657  T
Q  172 tttgtcatctccatgaaaca-attttacatatgaaacattgtacaattgaagttgtcatgtc 232  Q
    |||||||| ||||| |||||  ||||||| || ||||||| |||  ||| ||||||||||||    
T  45577656 tttgtcatgtccataaaacagcttttacaaatcaaacattataccgttggagttgtcatgtc 45577595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 50729606 - 50729455
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||||| || |||||| ||||||||||||||||  |||| ||| |||    || | | || ||| |||||| ||||| ||||||||||||||    
T  50729606 tttggtattttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgatagacaaaaatttcagtttttgtcatgtcccttgcctccagttt 50729507  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||  | ||| ||||||| ||||||| || ||||| || |||| |||||||||    
T  50729506 gttctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 50729455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 52949712 - 52949875
Alignment:
Q  46 ttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgc 144  Q
    |||||| |||||||||| ||||||  |||||| | ||||||||| || |||||| || |||||||||||||  |||| |||  || || || | | |  |    
T  52949712 ttatacgatttttgggggacaaaatgctattttgatattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttgctgagggacaaaaatatc 52949811  T
Q  145 agcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    || ||||||  |||||||||||||||||||||| | | | ||||||| ||||||| ||||||||    
T  52949812 agtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatgaaaca 52949875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 44649258 - 44649104
Alignment:
Q  46 ttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgc 144  Q
    |||||| |||||||||| ||||||  |||||| | ||||||||| || ||||||||| |||||||||||||  |||| |||  || || || | | |  |    
T  44649258 ttatacgatttttgggggacaaaatgctattttgatattttagacaacttgtacatgggacaaaaagttgtgttgtggtttgctgagggacaaaaatatc 44649159  T
Q  145 agcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttaca 199  Q
    || ||||||  |||||||||||||||||||||| | | | ||||||| |||||||    
T  44649158 agtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttaca 44649104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 21580008 - 21580088
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    ||||||||| |||||| ||||||| || |||| |  |||||| ||||||||||| || |||||| ||||||||||||||||    
T  21580008 atttttagttttatacgatttttgagggacaacatgctattttggtattttagacaatttgtacgtgagacaaaaagttgt 21580088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 50178597 - 50178405
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaa-gttgtagtgtgatttagtgggga 133  Q
    |||||| || |||||| |||||||||| ||||||  |||||| | ||||||||| || |||||| || |||||||| |||||  |||| |||  || ||     
T  50178597 attttttgttttatacgatttttgggggacaaaatgctattttgatattttagacaacttgtacgtgggacaaaaaagttgtgctgtggtttgctgaggc 50178498  T
Q  134 actagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    || | | |  ||| ||||||  |||||||||||||||||||||| | | | ||||||| ||||||| || ||||| || |||| |||||||||    
T  50178497 acaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 50178405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 232
Target Start/End: Original strand, 32181255 - 32181442
Alignment:
Q  46 ttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgc 144  Q
    |||||| |||||||||| || |||  |||||| ||||||||||| || |||||| || |||||||||||||| |||| ||| ||| || || | | |       
T  32181255 ttatactatttttgggggacgaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtactgtggtttggtgagggacaaaaatatg 32181354  T
Q  145 agcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgtcatgtc 232  Q
    || ||||||  |||| ||||| || |||||||| | | | ||||||| ||||||| || ||||| || |||| | |||||||||||||    
T  32181355 agtttttgtcctgtcccttgcatctagtttgtcctgtacttgaaacagttttacaaatcaaacactggacaactaaagttgtcatgtc 32181442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 47741409 - 47741448
Alignment:
Q  193 ttttacatatgaaacattgtacaattgaagttgtcatgtc 232  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  47741409 ttttacaaattaaacattgtacaattgaagttgtcatgtc 47741448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 26083434 - 26083512
Alignment:
Q  148 ttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    |||||| ||||| ||||||||||||||||  | ||| ||||||||||||||| || ||||| |  |||| |||||||||    
T  26083434 ttttgtcatgtcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaacactaaacaactgaagttgt 26083512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 36743782 - 36743712
Alignment:
Q  46 ttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  36743782 ttatacaatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 36743712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 38812502 - 38812675
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| || |    
T  38812502 attttttgttttatacgatttttgcggaacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgaggga 38812601  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || ||||||  |||| ||||||||||||||||| | | | ||||||| ||||||| || |||||    
T  38812602 caaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 38812675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 2630015 - 2629975
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  2630015 tttggtattttagacaacttgtacgtgagacaaaaagttgt 2629975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 4325773 - 4325853
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||| | |||||||||| ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  4325773 attttttgttttatgcgatttttgggggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 4325853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 12600908 - 12600948
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  12600908 tttggtattttagacaacttgtacgtgagacaaaaagttgt 12600948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 23521862 - 23521942
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  23521862 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 23521942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 33552946 - 33552866
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  33552946 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 33552866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 42772891 - 42772943
Alignment:
Q  156 tgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    ||||||||||||| |||||||||| | | ||||||||||||||| || |||||    
T  42772891 tgtctcttgcctcaagtttgtcatgtacctgaaacaattttacaaatcaaaca 42772943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 43641081 - 43641161
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  43641081 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 43641161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 47642595 - 47642515
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| |||||||||| ||||||  |||||| | ||||||||| || |||||| || |||||||||||||    
T  47642595 attttttgttttatacgatttttgggggacaaaatgctattttgatattttagacaacttgtacgtgggacaaaaagttgt 47642515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 13994221 - 13994070
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||||| || |||||||||||||||||||||||  |||| ||| ||| || || | | || ||| ||||||   ||  |||||||||| |||    
T  13994221 tttggtattttagacaacttgtacatgagacaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtccagttccttgcctccaattt 13994122  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||||| ||||||||||| ||||||| || ||||| || |||| |||||||||    
T  13994121 gtcatgtccatgaaacagttttacaaatcaaacactggacaactgaagttgt 13994070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 26733571 - 26733740
Alignment:
Q  64 acaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctct 162  Q
    |||||||||||||| ||||||||||| || ||||||||||| |||||||||||  | || |||||||||| || ||| || ||| |||||| |||||  |    
T  26733571 acaaaagactattttggtattttagacaacttgtacatgaggcaaaaagttgtgttatggtttagtgggggacaagaatttcagtttttgtcatgtccat 26733670  T
Q  163 tgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgtcatgtc 232  Q
     | ||| ||||||||   |||   ||||| ||||||| || |||||| |||||| |||||||||||||||    
T  26733671 cgtctctagtttgtccggtcctaaaaacagttttacaaatcaaacatcgtacaactgaagttgtcatgtc 26733740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 17327825 - 17327745
Alignment:
Q  46 ttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgattt 125  Q
    |||||| |||||||||| |||||| | ||||| ||||||||||| || |||||||||||||||||||||||  ||||||||    
T  17327825 ttatacgatttttgggggacaaaatattattttggtattttagataatttgtacatgagacaaaaagttgtgctgtgattt 17327745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 41968035 - 41967955
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || ||||||||||||||||  ||||||| |||||| ||||||||||| || |||||| ||||||||||||||||    
T  41968035 attttttgttttatacaatttttgggagacaaaaggctattttggtattttagacaacttgtacgtgagacaaaaagttgt 41967955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 16704835 - 16704905
Alignment:
Q  156 tgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    |||| ||||||||||||||||||| | | ||||||| ||||||| || |||||||| ||||||||||||||    
T  16704835 tgtcccttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaacattggacaattgaagttgt 16704905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 41972939 - 41973041
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||||| || |||||| |||||||||||||||||||||| ||| ||| || || | | |   || |||||| ||||| ||||||||||||||    
T  41972939 tttggtattttagacaacttgtacgtgagacaaaaagttgtagtgtggtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagttt 41973038  T
Q  175 gtc 177  Q
    |||    
T  41973039 gtc 41973041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 21071728 - 21071793
Alignment:
Q  161 cttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||||||||||||||||||| | | ||||||||||||||| || ||||| || ||||||||||||||    
T  21071728 cttgcctccagtttgtcatgtacctgaaacaattttacaaatcaaacactggacaattgaagttgt 21071793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 42512956 - 42512765
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||||| ||||||  |||||| | ||||||||| || |||||| |  |||||||||||||  |||| |||  || || |    
T  42512956 attttttgttttatacgatttttgggggacaaaattctattttgatattttagacaatttgtacgtaggacaaaaagttgtgttgtggtttgctgaggca 42512857  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    | | | |  ||| ||||||  |||||||||||||||||||||| | | | ||||||| ||||||| || ||||| || |||| |||||||||    
T  42512856 caaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 42512765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 16476331 - 16476261
Alignment:
Q  46 ttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    ||||||||||||||||| ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  16476331 ttatacaatttttgggggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 16476261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 45491061 - 45490888
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| || |    
T  45491061 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgaggga 45490962  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || |||||| ||||| ||||||||||||||||| | | | ||||||| ||||||| || |||||    
T  45490961 caaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacttgaaacagttttacaaatcaaaca 45490888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 28340489 - 28340409
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| ||||||||||||||||    
T  28340489 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaaagttgt 28340409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 31004120 - 31004311
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||  |||||||||| || ||| ||||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| || |    
T  31004120 attttttgttttataggatttttgggggacgaaatactattttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgaggga 31004219  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    | | |    ||| ||||||  |||| | ||||||||||||||| | | | ||||||| ||||||| || ||||| || |||| |||||||||    
T  31004220 caaaaacatcagtttttgtcctgtcccgtgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 31004311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 6144066 - 6143981
Alignment:
Q  141 ttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    |||||| ||||||  |||| ||||||||||||||||||| ||  ||||||  ||||||| || |||||||| |||| || ||||||    
T  6144066 ttgcagtttttgtcctgtcccttgcctccagtttgtcatgtctctgaaactgttttacaaatcaaacattggacaactgcagttgt 6143981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 844910 - 844830
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  844910 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 844830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 16386842 - 16386922
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  16386842 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 16386922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 42510513 - 42510593
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  42510513 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 42510593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 44748678 - 44748851
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||||| ||||||  |||||| ||||||||||| || |||||| || |||||||||||||| |||| ||| ||| || |    
T  44748678 attttttgttttatacgatttttgggggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtattgtggtttggtgaggga 44748777  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | ||  || ||||||| |||| |||||||| |||||||||| | | ||||||| ||||||| || |||||    
T  44748778 caaaaatttgagtttttgttctgtcccttgcctctagtttgtcatgtacctgaaacagttttacaaatcaaaca 44748851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 1363728 - 1363810
Alignment:
Q  144 cagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    |||||||||| ||||| ||||||||||||||||| | | ||||||||||||||||| || ||||| || |||| |||||||||    
T  1363728 cagcttttgtcatgtcccttgcctccagtttgtcctgtacatgaaacaattttacaaatcaaacactggacaactgaagttgt 1363810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 29992806 - 29992729
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttggtattttagagaaattgtacatgagacaaaaagtt 113  Q
    |||||| ||||||||| |||||||| | |||||| | ||||| |||||||||| || |||||| ||||||||||||||    
T  29992806 atttttggtcttatacgatttttggtggacaaaaaattattttgtattttagataacttgtacgtgagacaaaaagtt 29992729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 216
Target Start/End: Original strand, 40753138 - 40753319
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||  |||||||| ||| || |    
T  40753138 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtgatttggtgaggga 40753237  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaa 216  Q
    | | | |   || ||||||  |||| ||||||||||||||||| | | | ||||||| ||||||| || |||||||| ||||    
T  40753238 caaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacattggacaa 40753319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 21784864 - 21785027
Alignment:
Q  46 ttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgc 144  Q
    |||||| |||||||| | ||||||  |||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| || || | | |       
T  21784864 ttatacgatttttggaggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatatg 21784963  T
Q  145 agcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    || ||||||  |||||||||||||||||||||||| | | ||||||| ||||||| || |||||    
T  21784964 agtttttgtcctgtctcttgcctccagtttgtcatgtgcctgaaacagttttacaaatcaaaca 21785027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 218
Target Start/End: Complemental strand, 30599080 - 30598937
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||||| || |||||| ||||||||||||||||  |||| |||  || || || | | |   |||||||||  |||| ||||||||||||||    
T  30599080 tttggtattttagataatttgtacttgagacaaaaagttgtgttgtggtttgatgagggacaaaaatatgagcttttgtcctgtcccttgcctccagttt 30598981  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaatt 218  Q
    ||| | | | ||||||| ||||||| |||||||| || ||||||    
T  30598980 gtcctgtacctgaaacagttttacaaatgaaacagtggacaatt 30598937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 47953173 - 47953346
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| || |    
T  47953173 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgaggga 47953272  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || |||||| ||||| ||||||||||||||||| | | | ||||||| ||||||| || |||||    
T  47953273 caaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 47953346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 38301446 - 38301516
Alignment:
Q  156 tgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    |||||||||||||||||||||| | | | ||||||| ||||||| || ||||| || ||||||| ||||||    
T  38301446 tgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaattggagttgt 38301516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 18386508 - 18386680
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| || |    
T  18386508 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgaggga 18386607  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || ||||||  |||| ||||||||||||||||||| | | ||||||| ||||||| || |||||    
T  18386608 caaaaatatgag-ttttgtcctgtcccttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaaca 18386680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 10932669 - 10932589
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  10932669 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 10932589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 11250721 - 11250773
Alignment:
Q  156 tgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    |||| ||||||||||||||||| | | | ||||||||||||||| ||||||||    
T  11250721 tgtcccttgcctccagtttgtcctgtacctgaaacaattttacaaatgaaaca 11250773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 11321997 - 11321917
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  11321997 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 11321917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 22724599 - 22724479
Alignment:
Q  79 gtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagtttgtca 178  Q
    |||||||||| || |||||| || |||| |||||||   |||| ||| ||| || || | | ||||||||||||| || || |||||||||||||||||     
T  22724599 gtattttagacaacttgtacgtgggacataaagttgcgctgtggtttggtgagggacaaaaattgcagcttttgtcatatcccttgcctccagtttgtcc 22724500  T
Q  179 tctccatgaaacaattttaca 199  Q
    | ||| ||||||  |||||||    
T  22724499 tgtccctgaaactgttttaca 22724479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 32873881 - 32873801
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||| ||| || |||||| ||||||||||||||||    
T  32873881 attttttgttttatacgatttttgagggacaaaatgctattttggtatttcagacaacttgtacgtgagacaaaaagttgt 32873801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 34519535 - 34519655
Alignment:
Q  79 gtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagtttgtca 178  Q
    |||||||||| || |||||| || |||||||||||||  |||| ||| | | || || | | |||||| ||||||  |||| ||||||||||| ||||||    
T  34519535 gtattttagacaacttgtacctgggacaaaaagttgtgttgtggtttggcgagggacaaaaattgcagtttttgtcctgtcccttgcctccagcttgtca 34519634  T
Q  179 tctccatgaaacaattttaca 199  Q
    | ||| ||||||  |||||||    
T  34519635 tgtccctgaaactgttttaca 34519655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 46633680 - 46633760
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  46633680 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 46633760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 47947743 - 47947823
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  47947743 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 47947823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 32860074 - 32860221
Alignment:
Q  79 gtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagtttgtca 178  Q
    |||||||||| || |||||| |||||||||| |||||  |||| ||| | |  | || | | ||||||||||||| ||||| ||||||||||||||||||    
T  32860074 gtattttagaaaacttgtacgtgagacaaaaggttgtgctgtggtttggcgatggacaaaaattgcagcttttgtcatgtcccttgcctccagtttgtca 32860173  T
Q  179 tctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    | ||| ||||||  ||||||| || ||||| || ||||||| ||||||    
T  32860174 tgtccctgaaactgttttacaaatcaaacactggacaattggagttgt 32860221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 9614066 - 9614142
Alignment:
Q  148 ttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagtt 224  Q
    |||||| ||||| |||||||||||||| || | ||| ||||||| ||||||| || ||||||||||||| |||||||    
T  9614066 ttttgtcatgtcccttgcctccagtttatcctgtccttgaaacagttttacaaatcaaacattgtacaactgaagtt 9614142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 10485136 - 10485327
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||||| ||||||  |||||| | ||||||||| || |||||| || |||||||||||||  |||| |||  || || |    
T  10485136 attttttgttttatacgatttttgggggacaaaatgctattttgatattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttgctgaggga 10485235  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    | | | |  ||| ||||||  |||||||||||||||||||||| | | | ||||| ||||||||| || ||||| || |||| || ||||||    
T  10485236 caaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaataattttacaaatcaaacactggacaactggagttgt 10485327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 24242643 - 24242816
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| || |    
T  24242643 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgatgtggtttggtgaggga 24242742  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || ||||||| |||| ||||||||||||||||| | | | ||||||| ||||||| || |||||    
T  24242743 caaaaatatgagtttttgttgtgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 24242816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 34176809 - 34176982
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| |||||||||||  | |||||| || |||||||||||||  |||||||| ||| |  |    
T  34176809 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagactacttgtacgtgggacaaaaagttgtgctgtgatttggtgagaga 34176908  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || |||||| ||||| ||||||||||||||||||| | | ||||||| ||||||| || |||||    
T  34176909 caaaaatatgagtttttgtcatgtcacttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaaca 34176982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 11382043 - 11382123
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| ||||||||||||||||    
T  11382043 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaaagttgt 11382123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 10324221 - 10324181
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  10324221 tttggtattttagacaacttgtacgtgagacaaaaagttgt 10324181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 11279147 - 11279187
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  11279147 tttggtattttagacaacttgtacgtgagacaaaaagttgt 11279187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 17867814 - 17867894
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  17867814 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaatttgtacgtgggacaaaaagttgt 17867894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 17877597 - 17877677
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  17877597 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaatttgtacgtgggacaaaaagttgt 17877677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 3964308 - 3964459
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||||| || ||||||||| |||||||||||||  |||| ||| ||| || || | | || ||| ||||||   ||  |||||||||| |||    
T  3964308 tttggtattttagacaacttgtacatgggacaaaaagttgtgctgtggtttggtgagggacaaaaatttcagtttttgtccagttccttgcctccaattt 3964407  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||||| ||||||||||| ||||||| || ||||| || |||| |||||||||    
T  3964408 gtcatgtccatgaaacagttttacaaatcaaacactggacaactgaagttgt 3964459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 19906782 - 19906933
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||| ||||||| || |||||| ||||||||||||||||  |||| ||| ||| || || | | || ||| ||||||  |||| ||||||||||||||    
T  19906782 tttggtgttttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgagggacaaaaatttcagtttttgtcctgtcccttgcctccagttt 19906881  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||  | ||| ||||||||||||||| || ||||| || |||| |||||||||    
T  19906882 gttctgtccctgaaacaattttacaaatcaaacactggacaactgaagttgt 19906933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 33364883 - 33364692
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||||| ||||||  |||||| | ||||||||| || |||||| ||||||||||||||||  |||| |||  || ||      
T  33364883 attttttgttttatacgatttttgggggacaaaatgctattttgatattttagacaacttgtacgtgagacaaaaagttgtgatgtggtttgctgagggg 33364784  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    | | | |  ||| ||||||  |||||||||||||||||||||| | | | ||||||| ||||||| || ||||| || |||| |||||||||    
T  33364783 caaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaataaaacactggacaactgaagttgt 33364692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 25860526 - 25860353
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||| | ||||||  |||||| ||||||||||| || |||||| ||||||||||||||||  |||| ||| ||| || |    
T  25860526 attttttgttttatacgatttttggagaacaaaatgctatttcggtattttagacaacttgtacgtgagacaaaaagttgtgatgtggtttggtgaggga 25860427  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || |||||| ||||| ||||||||||||||||| | | | ||||||| ||||||| || |||||    
T  25860426 caaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 25860353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 21221465 - 21221385
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||||||||||| || ||||||  |||||| ||||||||||| || |||||| ||||||||||||||||    
T  21221465 attttttgttttatacaatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaaagttgt 21221385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 31883127 - 31882936
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||||| ||||||  |||||| | ||||||||| || |||||| || |||||||||||||  |||| |||  || || |    
T  31883127 attttttgttttatacgatttttgggggacaaaatgctattttgatattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttgctgaggca 31883028  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    | | | |  ||| ||||||  |||||||||||||||||||||| | | | ||||||| ||||||| || ||||| || |||| || ||||||    
T  31883027 caaaaatatcagtttttgtcgtgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactggagttgt 31882936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 22484738 - 22484657
Alignment:
Q  145 agcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||||||||| ||||| ||||||||||||||||||| ||| ||||||  ||||||| || || || || ||||||| ||||||    
T  22484738 agcttttgtcatgtcccttgcctccagtttgtcatgtccctgaaactgttttacaaatcaatcactggacaattggagttgt 22484657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 50386561 - 50386388
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttgg-tattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || ||||||||||||||||| ||||||  |||||| | ||||||||| || |||||| |  |||||||||||||  |||| |||  || || |    
T  50386561 attttttgttttatacaatttttggggaacaaaatgctattttgatattttagacaacttgtacgtaggacaaaaagttgtgctgtggtttgttgaggca 50386462  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |  ||  |||||| ||||||||||||||||||||||| | | | ||||||| ||||||| || |||||    
T  50386461 caaaaatatcaatttttgtcatgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 50386388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 1344812 - 1344732
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| ||||||||||||||||    
T  1344812 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaaagttgt 1344732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 32768685 - 32768764
Alignment:
Q  148 ttttgttatgtctcttgcctccagtttgtcat--ctccatgaaacaattttacatatgaaacattgtacaattgaagttg 225  Q
    |||||| ||||||||||| |   |||||||||  |||| ||||||||||||||| || ||||| ||||||||||||||||    
T  32768685 ttttgtcatgtctcttgctttttgtttgtcatgtctccctgaaacaattttacaaatcaaacactgtacaattgaagttg 32768764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 3695387 - 3695317
Alignment:
Q  46 ttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    ||||||||||||||||| | |||| ||||||| ||||||||||| || |||||| || ||||||| |||||    
T  3695387 ttatacaatttttgggggataaaatactattttggtattttagacaacttgtacgtgggacaaaaggttgt 3695317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 41683037 - 41682967
Alignment:
Q  156 tgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    |||||||||||||||||||||| | | | ||||||| ||||||| || ||||| || |||| |||||||||    
T  41683037 tgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 41682967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 38213334 - 38213507
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| |||||||||| ||||||   ||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| |  |    
T  38213334 attttttgttttatacgatttttgggggacaaaatggtattttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttcgtgagtga 38213433  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || ||||||  |||||||||||||||| ||||| | | | ||||||||||||||| || |||||    
T  38213434 caaaaatatgagtttttgtcctgtctcttgcctccagattgtcctatacctgaaacaattttacaaatcaaaca 38213507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 3867737 - 3867581
Alignment:
Q  53 atttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagctttt 151  Q
    |||||||||| ||||||  |||||| ||| ||||||| || |||||| |  |||||||||||||  |||| ||| ||| || || | | || ||| ||||    
T  3867737 atttttgggggacaaaatgctattttggtgttttagaaaacttgtacgtaggacaaaaagttgtgctgtggtttggtgagggacaaaaatttcaggtttt 3867638  T
Q  152 gttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    || |||||||||| ||||||| |||  | ||| ||||||| ||||||| || |||||    
T  3867637 gtcatgtctcttgtctccagtatgttctgtccctgaaacagttttacaaatcaaaca 3867581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 4851561 - 4851481
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  4851561 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 4851481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 28675770 - 28675850
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  28675770 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 28675850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 47958537 - 47958457
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  47958537 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 47958457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 50678818 - 50678858
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  50678818 tttggtattttagacaacttgtacgtgagacaaaaagttgt 50678858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 53557860 - 53557820
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  53557860 tttggtattttagacaacttgtacgtgagacaaaaagttgt 53557820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 41366181 - 41366030
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||||| || |||||  ||||||||||| ||||  |||| ||| ||| || || | | || ||| ||||||  | |||||||||||||||||    
T  41366181 tttggtattttagacaacttgtatgtgagacaaaaaattgtgttgtggtttggtgagggacaaaaatttcagtttttgtcctatctcttgcctccagttt 41366082  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||||| ||| ||||||  ||| ||| || |||||||| ||||||| ||||||    
T  41366081 gtcatgtccctgaaactgtttcacaaatcaaacattgcacaattggagttgt 41366030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 26796216 - 26796286
Alignment:
Q  44 tcttatacaatttttggggcacaaaagactatttggtattttagagaaattgtacatgagacaaaaagttg 114  Q
    |||||||  |||||||| | ||||||||||||||||||||||||| || |||||| || ||||||||||||    
T  26796216 tcttatatgatttttggtggacaaaagactatttggtattttagacaacttgtacgtgtgacaaaaagttg 26796286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 30326442 - 30326362
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || |||||| ||||||| ||||||||||| || |||||| ||||||||||||||||    
T  30326442 attttttgttttatacgatttttgagggacaaaatactattttggtattttagacaacttgtacgtgagacaaaaagttgt 30326362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 7761684 - 7761511
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| ||||||||||||||||  |||| ||| ||| || |    
T  7761684 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgaggga 7761585  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || ||||||  |||| |||||||| |||||||||| | | ||||||| ||||||| || |||||    
T  7761584 caaaaatatgagtttttgtcctgtcccttgcctctagtttgtcatgtacctgaaacagttttacaaatcaaaca 7761511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 17237319 - 17237274
Alignment:
Q  185 tgaaacaattttacatatgaaacattgtacaattgaagttgtcatg 230  Q
    ||||||||||||||| || ||| |||||||||||||||||||||||    
T  17237319 tgaaacaattttacaaatcaaaaattgtacaattgaagttgtcatg 17237274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 44284608 - 44284781
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactatttggt-attttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| || |||||||| || |||||| ||||||||||||||||  |||| ||||||| || |    
T  44284608 attttttgttttatacgatttttgagggacaaaatgctattttgttattttagacaacttgtacgtgagacaaaaagttgtgctgtggtttagtgaggga 44284707  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || ||||||  |||| ||||||||||||||||| | | | ||||||| ||||||| || |||||    
T  44284708 caaaaatatgagtttttgtcttgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 44284781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 16104253 - 16104333
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| ||||||||||||||||    
T  16104253 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaatttgtacgtgagacaaaaagttgt 16104333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 17540693 - 17540867
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt--ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtgggga 133  Q
    |||||| || |||||| ||||||| || |||||| |||||||  ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| ||     
T  17540693 attttttgttttatacgatttttgagggacaaaatactatttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgaggg 17540792  T
Q  134 actagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    || | | |   || ||||||  |||| ||||||||||||||||| | | | ||||||| ||||||| || |||||    
T  17540793 acaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacttgaaacagttttacaaatcaaaca 17540867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 40832570 - 40832500
Alignment:
Q  46 ttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| |||||||||| || ||| ||||||| |||||||||||  | |||||| ||||||||||||||||    
T  40832570 ttatacgatttttgggggacgaaatactattttggtattttagactacttgtacgtgagacaaaaagttgt 40832500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 7258916 - 7259049
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||||||||||| || |||||| ||||||||||||||||  |||| ||| ||| || || | | |   || ||||||  |||| ||||||||||||||    
T  7258916 tttggtattttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagttt 7259015  T
Q  175 gtcatctccatgaaacaattttacatatgaaaca 208  Q
    ||| | | | ||||||| ||||||| || |||||    
T  7259016 gtcctgtacctgaaacagttttacaaatcaaaca 7259049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 9717215 - 9717283
Alignment:
Q  48 atacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||| ||||||| || |||||| ||||||| ||||||||||| || |||||| || |||||||||||||    
T  9717215 atacgatttttgagggacaaaatactattttggtattttagacaacttgtacgtgggacaaaaagttgt 9717283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 16177954 - 16177914
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  16177954 tttggtattttagacaacttgtacgtgagacaaaaagttgt 16177914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 26418902 - 26418982
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || ||||||||||||||||| | ||||   ||||| ||||||||||| || |||||| || |||||||||||||    
T  26418902 attttttgttttatacaatttttgggggataaaatgttattttggtattttagacaacttgtacgtgggacaaaaagttgt 26418982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 15168 - 15334
Alignment:
Q  53 atttttggggcacaaaagactatttg-gtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagctttt 151  Q
    |||||||||| |||||| |||||||  |||||||||| || |||||| ||||||||||||||||  |||| ||| |||||| || | | |   || ||||    
T  15168 atttttgggggacaaaatactattttagtattttagacaacttgtacgtgagacaaaaagttgtgttgtggtttggtgggggacaaaaatatgagttttt 15267  T
Q  152 gttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaacattgtacaatt 218  Q
    ||  |||| ||||||||||||||||| | | | ||||||| ||||||| || ||||| || ||||||    
T  15268 gtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaatt 15334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 27839180 - 27839110
Alignment:
Q  46 ttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| |||||||| | ||||||| |||||| ||||||||||| || |||||||||||||||||||||||    
T  27839180 ttatacgatttttggaggacaaaaggctattttggtattttagacaacttgtacatgagacaaaaagttgt 27839110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 21739278 - 21739105
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||||||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| || |    
T  21739278 attttttgttttatacaatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgaggga 21739179  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || ||||||  |||| ||||||||||||||||| | | | ||||||| ||||||| || |||||    
T  21739178 caaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaaca 21739105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 7208347 - 7208267
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| ||||||||||||||||    
T  7208347 attttttgttttatacgatttttgaggaacaaaatgctattttggtattttagacaacttgtacgtgagacaaaaagttgt 7208267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 35955066 - 35955142
Alignment:
Q  123 tttagtggggaactagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttaca 199  Q
    ||||||| ||||| ||| || ||| ||||||  |||||| ||||||||||||||||| ||  |||||||||||||||    
T  35955066 tttagtgcggaacaagaatttcagtttttgtcttgtctcatgcctccagtttgtcatgtctttgaaacaattttaca 35955142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 39918496 - 39918566
Alignment:
Q  46 ttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| |||||||||| ||||||   ||||| ||||||||||| || |||||| ||||||||||||||||    
T  39918496 ttatacgatttttgggggacaaaatgttattttggtattttagacaacttgtacgtgagacaaaaagttgt 39918566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 700678 - 700638
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  700678 tttggtattttagataacttgtacgtgagacaaaaagttgt 700638  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 32528694 - 32528774
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  32528694 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 32528774  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 40182483 - 40182523
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || ||||||||| |||||||||||||    
T  40182483 tttggtattttagacaacttgtacatgggacaaaaagttgt 40182523  T

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Target: scaffold0650 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 1720 - 1569
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||| ||||||| || |||||| || |||||||||||||  |||| ||| ||| || || | | || ||| ||||||  |||| ||||||||||||||    
T  1720 tttggttttttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtcttgtcccttgcctccagttt 1621  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||| | ||| ||||||| ||||||| || ||||| || | || |||||||||    
T  1620 gtcctatccttgaaacagttttacaaatcaaacactggagaactgaagttgt 1569  T

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Target: scaffold0280 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 13764 - 13613
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaactagagttgcagcttttgttatgtctcttgcctccagttt 174  Q
    |||||| ||||||| || |||||  || |||||||||||||| |||| ||| ||| || || | | || ||| ||||||  | || ||||||||||||||    
T  13764 tttggtgttttagacaacttgtaagtgggacaaaaagttgtactgtggtttggtgagggacaaaaatttcagtttttgtcctatcccttgcctccagttt 13665  T
Q  175 gtcatctccatgaaacaattttacatatgaaacattgtacaattgaagttgt 226  Q
    ||  | ||| ||||||||||||||| || ||||| || |||| || ||||||    
T  13664 gttctgtccctgaaacaattttacaaatcaaacactggacaactggagttgt 13613  T

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Target: scaffold0360 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 13689 - 13616
Alignment:
Q  43 gtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    ||||||||| |||||||  | |||||| ||||||| |||||| |||| || ||||||||| |||||||||||||    
T  13689 gtcttatacgatttttgatggacaaaatactattttggtattctagacaacttgtacatgtgacaaaaagttgt 13616  T

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Target: scaffold0360; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 15458 - 15418
Alignment:
Q  75 tttggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||||||||||| || ||||||||| |||||||||||||    
T  15458 tttggtattttagacaacttgtacatgggacaaaaagttgt 15418  T

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Target: scaffold0169 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 18171 - 17998
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgtagtgtgatttagtggggaa 134  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||  |||| ||| ||| || |    
T  18171 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgaggga 18072  T
Q  135 ctagagttgcagcttttgttatgtctcttgcctccagtttgtcatctccatgaaacaattttacatatgaaaca 208  Q
    | | | |   || ||||||  |||| |||||||||| |||||||| | | ||||||| ||||||| || |||||    
T  18071 caaaaatatgagtttttgtcctgtcccttgcctccaatttgtcatgtacctgaaacagttttacaaatcaaaca 17998  T

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Target: scaffold0169; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 12653 - 12573
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| || |||||| ||||||| || ||||||  |||||| ||||||||||| || |||||| || |||||||||||||    
T  12653 attttttgttttatacgatttttgagggacaaaatgctattttggtattttagacaacttgtacgtgggacaaaaagttgt 12573  T

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Target: scaffold0957 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 2612 - 2540
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaa 107  Q
    |||||| || |||||| |||||||||| ||||||  |||||| ||||||||||| || |||||| ||||||||    
T  2612 attttttgttttatacgatttttgggggacaaaatgctattttggtattttagacaacttgtacgtgagacaa 2540  T

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Target: scaffold0155 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 33661 - 33581
Alignment:
Q  36 atttttagtcttatacaatttttggggcacaaaagactattt-ggtattttagagaaattgtacatgagacaaaaagttgt 115  Q
    |||||| ||||||||||| |||||  | ||||||| |||||| ||||||||| | || |||||| || |||||||||||||    
T  33661 atttttggtcttatacaagttttgatggacaaaagcctattttggtattttatacaatttgtacgtgggacaaaaagttgt 33581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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