View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3343_low_11 (Length: 240)
Name: NF3343_low_11
Description: NF3343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3343_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 36773914 - 36774070
Alignment:
| Q |
1 |
tataaaagagaaagacataacattgagataatcg--acccgaaaagccaaagaccaaataagtgcatgccttgtaggaagaacgagaagtaaaataaaac |
98 |
Q |
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| T |
36773914 |
tataaaagagaaagacataacattgagataatcggaacccgaaaagccaaagaccaaataagtgcatgccttgtaggaagaacgagaagtaaaataaaac |
36774013 |
T |
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| Q |
99 |
ttttgtggtctgttataagcatgaattagattcaataatgagagaaggcaagaaggg |
155 |
Q |
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| T |
36774014 |
ttttgtggtctgttataagcatgaattagattcaataacgagagaaggcaagaaggg |
36774070 |
T |
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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 36774125 - 36774194
Alignment:
| Q |
155 |
gccctgttcagaagttgaaatagggtccatgatcaaactagaggaactaattaagatgaaaataatgtat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36774125 |
gccctgttcagaagttgaaatagggtccatgatcaaactagaggaactaattaagatgaaaataatgtat |
36774194 |
T |
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