View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3343_low_13 (Length: 205)
Name: NF3343_low_13
Description: NF3343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3343_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 7140177 - 7140351
Alignment:
| Q |
14 |
cagagatttggagtgtataactcgaacttgcaataacctaatgccgaggagctgtagtctattgttaaattggtaagcgtggcacttgatatgcataggt |
113 |
Q |
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| T |
7140177 |
cagagatttggagtgtataactcgaacttgcaataacctaatgcccaggagccgtagtctattgttaaattggtgagcgtggcacttgatatgcaaaggt |
7140276 |
T |
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| Q |
114 |
tttgtttgttaaaagagcaacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaacac |
188 |
Q |
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| T |
7140277 |
tttgtttgtcaagggtgcgacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaacac |
7140351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 8656092 - 8656266
Alignment:
| Q |
14 |
cagagatttggagtgtataactcgaacttgcaataacctaatgccgaggagctgtagtctattgttaaattggtaagcgtggcacttgatatgcataggt |
113 |
Q |
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| T |
8656092 |
cagagatttggagtgtataactcgaacttgcaataacctaatgcccaggagtcgtagtctattgttaaattggtgagtgtggcacttgatatgcagaggt |
8656191 |
T |
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| Q |
114 |
tttgtttgttaaaagagcaacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaacac |
188 |
Q |
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| T |
8656192 |
tttgtttgtcaagagagcgacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaacac |
8656266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 8679788 - 8679962
Alignment:
| Q |
14 |
cagagatttggagtgtataactcgaacttgcaataacctaa-tgccgaggagctgtagtctattgttaaattggtaagcgtggcacttgatatgcatagg |
112 |
Q |
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| T |
8679788 |
cagagatttggagtgcataactcgaacttgtaatagcctaactgcc-aggagccatagtctattgttaaattggtgagcgtggcactcgatatgcaaagg |
8679886 |
T |
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| Q |
113 |
ttttgtttgttaaaagagcaacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaacac |
188 |
Q |
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|||| ||| | || | |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8679887 |
ttttatttatcaagaacgcaacaattttgaacaatcaagctattcaacctcttaaatgctgaaaaaggctcaacac |
8679962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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