View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3343_low_3 (Length: 384)
Name: NF3343_low_3
Description: NF3343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3343_low_3 |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 6522007 - 6522369
Alignment:
| Q |
1 |
tcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6522007 |
tcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctaga |
6522106 |
T |
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| Q |
101 |
attgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaacgccatcagattcaccctcgccatcaccggtgcctgtgccag |
200 |
Q |
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| T |
6522107 |
attgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaacgccatcagattcaccctcgccatcaccggtgcctgtgccag |
6522206 |
T |
|
| Q |
201 |
tgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactatatctttgatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6522207 |
tgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactatatctttgatat |
6522306 |
T |
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| Q |
301 |
attaaatatttaatgtctcactatgtgttaattctggtttttgcagataagggcaacacgtcaag |
365 |
Q |
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| T |
6522307 |
attaaatatttaatgtctcac--tgtgttaattctggtttttgcagataagggcaacacgtcaag |
6522369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 6517028 - 6516870
Alignment:
| Q |
1 |
tcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctaga |
100 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||| | |||||||| |
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| T |
6517028 |
tcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgagtgctaga |
6516929 |
T |
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| Q |
101 |
attgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaac |
159 |
Q |
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| T |
6516928 |
gttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaac |
6516870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 6512629 - 6512475
Alignment:
| Q |
1 |
tcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctaga |
100 |
Q |
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||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||| ||| ||| ||||||||||| ||||| ||||||||| |
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| T |
6512629 |
tcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggtgctaga |
6512530 |
T |
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| Q |
101 |
attgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
155 |
Q |
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| T |
6512529 |
attgttagaccaagttgttatttgagatatgaaaccgattcactcttctatcaac |
6512475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 6506722 - 6506562
Alignment:
| Q |
1 |
tcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggt |
94 |
Q |
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|||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| || ||||||| ||||| |
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| T |
6506722 |
tcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggt |
6506623 |
T |
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| Q |
95 |
gctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
155 |
Q |
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| T |
6506622 |
ggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
6506562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 6506501 - 6506438
Alignment:
| Q |
198 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
261 |
Q |
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|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
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| T |
6506501 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
6506438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 47778382 - 47778456
Alignment:
| Q |
61 |
agaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaac |
135 |
Q |
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| T |
47778382 |
agaaatttcaagatgttgtaaaaataggattggtgctagaattgttagacctagctgtaatttgaggtttgaaac |
47778456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 47788475 - 47788578
Alignment:
| Q |
32 |
tgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatg |
131 |
Q |
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||||||||||||||| ||||||| || ||| |||||| ||||||| ||||||| | |||||||||||| ||||||| || ||||||||||| | || |
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| T |
47788475 |
tgtgatgattgtttgcttcaatccattgctgaagtttcaagatgttgtagcaataggattggtgctagaattattagaccaagctgtaatttgaggtttg |
47788574 |
T |
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| Q |
132 |
aaac |
135 |
Q |
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|||| |
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| T |
47788575 |
aaac |
47788578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 747 - 587
Alignment:
| Q |
1 |
tcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggt |
94 |
Q |
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|||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| || ||||||| ||||| |
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| T |
747 |
tcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggt |
648 |
T |
|
| Q |
95 |
gctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
155 |
Q |
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| |||| || |||||||||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
647 |
ggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 8400 - 8240
Alignment:
| Q |
1 |
tcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggt |
94 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| || ||||||| ||||| |
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| T |
8400 |
tcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggt |
8301 |
T |
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| Q |
95 |
gctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
155 |
Q |
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| T |
8300 |
ggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
8240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 526 - 463
Alignment:
| Q |
198 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
261 |
Q |
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|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
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| T |
526 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 8179 - 8116
Alignment:
| Q |
198 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
261 |
Q |
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|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
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| T |
8179 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
8116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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