View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3343_low_5 (Length: 373)

Name: NF3343_low_5
Description: NF3343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3343_low_5
NF3343_low_5
[»] chr6 (5 HSPs)
chr6 (113-358)||(33597279-33597526)
chr6 (19-116)||(33596738-33596835)
chr6 (48-107)||(20148203-20148262)
chr6 (48-107)||(22184566-22184625)
chr6 (48-107)||(19305350-19305410)
[»] chr5 (2 HSPs)
chr5 (38-96)||(32418622-32418680)
chr5 (35-110)||(26994739-26994814)
[»] chr2 (3 HSPs)
chr2 (54-112)||(45714897-45714955)
chr2 (54-96)||(12168891-12168933)
chr2 (35-107)||(30638449-30638521)
[»] chr8 (2 HSPs)
chr8 (44-96)||(24507355-24507407)
chr8 (64-110)||(6928216-6928262)
[»] chr4 (2 HSPs)
chr4 (44-96)||(12683683-12683735)
chr4 (54-95)||(3981869-3981910)
[»] chr1 (1 HSPs)
chr1 (44-96)||(23280402-23280454)
[»] chr3 (3 HSPs)
chr3 (49-96)||(9801230-9801277)
chr3 (47-96)||(17143894-17143943)
chr3 (46-110)||(17485768-17485832)
[»] chr7 (1 HSPs)
chr7 (31-96)||(39879284-39879349)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 113 - 358
Target Start/End: Original strand, 33597279 - 33597526
Alignment:
Q  113 tataaaacgagatgtgaacctaaaatttgaatattgtcatttttt-aaggtaattagtatattaagaaaa-agtaaactatcaaatttgttattgatttc 210  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  33597279 tataaaaggagatgtgaacctaaaatttgaataatgtcatttttttaacgtaattagtatattaaaaaaaaagtaaactatcaaatttgttattgatttc 33597378  T
Q  211 ataggacgctttcaaaaggtcatttaagattgtgaatattttaaaaggaacttgtaagacattactcatatcagcttgaatcaaacatttacatttgaat 310  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33597379 ataggacgcttacaaaaggtcttttaagattgtaaatattttaaaaggaacttgtaagacattactcatatcagcttgaatcaaacatttacatttgaat 33597478  T
Q  311 tgataagttggtcattatgtttcaaaacttaatatcaaataggtattt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33597479 tgataagttggtcattatgtttcaaaacttaatatcaaataggtattt 33597526  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 33596835 - 33596738
Alignment:
Q  19 ttcttcgccgctgtatcagaagccttcaccgtcacaccggagcattttccgccacggttgccactcatccatcctcactagacaaatcaaaatctata 116  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33596835 ttcttcgccgccgtatcagaagccttcaccgtcacactggagcattttccgccacggttgccactcatccatcctcactggacaaatcaaaatctata 33596738  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 20148262 - 20148203
Alignment:
Q  48 cgtcacaccggagcattttccgccacggttgccactcatccatcctcactagacaaatca 107  Q
    ||||||||||||||| |||||||||   |||||||||||||||||||||| |||| ||||    
T  20148262 cgtcacaccggagcactttccgccatcattgccactcatccatcctcactggacatatca 20148203  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 22184566 - 22184625
Alignment:
Q  48 cgtcacaccggagcattttccgccacggttgccactcatccatcctcactagacaaatca 107  Q
    ||||||||||||||| |||||||||   |||||||||||||||||||||| |||| ||||    
T  22184566 cgtcacaccggagcactttccgccatcattgccactcatccatcctcactggacatatca 22184625  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 19305410 - 19305350
Alignment:
Q  48 cgtcacaccggagca-ttttccgccacggttgccactcatccatcctcactagacaaatca 107  Q
    ||||||||||||||| |||| ||||||  |||| |||||||||||||||||||||| ||||    
T  19305410 cgtcacaccggagcaattttacgccaccattgctactcatccatcctcactagacatatca 19305350  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 32418622 - 32418680
Alignment:
Q  38 aagccttcaccgtcacaccggagcattttccgccacggttgccactcatccatcctcac 96  Q
    ||||||| ||| |||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  32418622 aagcctttaccatcacaccgtagcattttccgccaccgttgccattcatccatcctcac 32418680  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 26994739 - 26994814
Alignment:
Q  35 cagaagccttcaccgtcacaccggagcattttccgccacggttgccactcatccatcctcactagacaaatcaaaa 110  Q
    ||||| || ||||||||||| ||||||| ||||| |||| ||| || |||||||||||||||  ||||||||||||    
T  26994739 cagaaaccatcaccgtcacatcggagcactttccaccactgttacctctcatccatcctcaccggacaaatcaaaa 26994814  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 45714955 - 45714897
Alignment:
Q  54 accggagcattttccgccacggttgccactcatccatcctcactagacaaatcaaaatc 112  Q
    ||||||||| |||||||||  ||||||||||||||||||||| | ||||||||| ||||    
T  45714955 accggagcactttccgccattgttgccactcatccatcctcattggacaaatcataatc 45714897  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 12168933 - 12168891
Alignment:
Q  54 accggagcattttccgccacggttgccactcatccatcctcac 96  Q
    |||||||||||||||||||| |||||| |||||||||| ||||    
T  12168933 accggagcattttccgccactgttgcctctcatccatcttcac 12168891  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 30638521 - 30638449
Alignment:
Q  35 cagaagccttcaccgtcacaccggagcattttccgccacggttgccactcatccatcctcactagacaaatca 107  Q
    |||||||| | ||||||||||| | ||||| ||||| || |||||||||||||| | |||||| |||| ||||    
T  30638521 cagaagccattaccgtcacaccagtgcattatccgcaaccgttgccactcatccgttctcactggacatatca 30638449  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 24507407 - 24507355
Alignment:
Q  44 tcaccgtcacaccggagcattttccgccacggttgccactcatccatcctcac 96  Q
    |||||||||||| |||||||| |||| ||| |||||| |||||||||||||||    
T  24507407 tcaccgtcacactggagcattatccgtcaccgttgcctctcatccatcctcac 24507355  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 6928216 - 6928262
Alignment:
Q  64 tttccgccacggttgccactcatccatcctcactagacaaatcaaaa 110  Q
    |||||||||| |||||| ||||||||||||||| ||||| |||||||    
T  6928216 tttccgccactgttgcctctcatccatcctcaccagacagatcaaaa 6928262  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 12683735 - 12683683
Alignment:
Q  44 tcaccgtcacaccggagcattttccgccacggttgccactcatccatcctcac 96  Q
    |||||||||||| ||| |||| ||||||||  |||||||||||||||||||||    
T  12683735 tcaccgtcacactggaacattatccgccacctttgccactcatccatcctcac 12683683  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 3981910 - 3981869
Alignment:
Q  54 accggagcattttccgccacggttgccactcatccatcctca 95  Q
    |||||| ||||||||||||| |||||| ||||||||||||||    
T  3981910 accggaacattttccgccaccgttgcctctcatccatcctca 3981869  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 23280402 - 23280454
Alignment:
Q  44 tcaccgtcacaccggagcattttccgccacggttgccactcatccatcctcac 96  Q
    |||||||| |||| ||||| |||||||||| |||||||||||| |||||||||    
T  23280402 tcaccgtctcaccagagcactttccgccaccgttgccactcattcatcctcac 23280454  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 9801230 - 9801277
Alignment:
Q  49 gtcacaccggagcattttccgccacggttgccactcatccatcctcac 96  Q
    |||||| |||||||||||||||||| |||||  |||||||||||||||    
T  9801230 gtcacatcggagcattttccgccactgttgcttctcatccatcctcac 9801277  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 17143894 - 17143943
Alignment:
Q  47 ccgtcacaccggagcattttccgccacggttgccactcatccatcctcac 96  Q
    |||||||||||||| ||| |||||||| |||| ||||||||||| |||||    
T  17143894 ccgtcacaccggagaattatccgccaccgttgacactcatccattctcac 17143943  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 17485768 - 17485832
Alignment:
Q  46 accgtcacaccggagcattttccgccacggttgccactcatccatcctcactagacaaatcaaaa 110  Q
    |||||||||| |||||||| |||||| | |||||||||||||| | |||||  |||| |||||||    
T  17485768 accgtcacactggagcattatccgccgccgttgccactcatccgttctcaccggacagatcaaaa 17485832  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 39879349 - 39879284
Alignment:
Q  31 gtatcagaagccttcaccgtcacaccggagcattttccgccacggttgccactcatccatcctcac 96  Q
    ||||| ||| || ||||||||||||||||||| ||||| |||| |||| | ||||||||| |||||    
T  39879349 gtatcggaaaccatcaccgtcacaccggagcactttccaccaccgttgtctctcatccattctcac 39879284  T

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