View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3343_low_8 (Length: 283)
Name: NF3343_low_8
Description: NF3343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3343_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 42467013 - 42467276
Alignment:
| Q |
18 |
gaatgtgggaggtggaggtgatatagcaaacatgtgggttaaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagca |
117 |
Q |
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| T |
42467013 |
gaatgtgggaggtggaggtgatatagcaaacatgtgggttaaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagca |
42467112 |
T |
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| Q |
118 |
tttgcaacacttagtggccaaactctttctttcaagattacttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaactggggtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42467113 |
tttgcaacacttagtggccaaactctttctttcaagattacttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaactggggtg |
42467212 |
T |
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| Q |
218 |
ctggaataacctattccacacatgtcaattttcattgaagtatgttgccatctgtgctcctcct |
281 |
Q |
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| T |
42467213 |
ctggactaacctattccacacatgtcaattttcattgaagtatgttgccatcagtgctcatcct |
42467276 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 3183695 - 3183511
Alignment:
| Q |
25 |
ggaggtggaggtgatatagcaaacatgtgggttaaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagcatttgcaa |
124 |
Q |
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||||||||||| ||||| | | |||| ||| |||||||| |||||||||||||||| |||||||| || ||||||||||| |||||||||||||||| |
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| T |
3183695 |
ggaggtggaggagatatgtcgagcatgatggtgaaaggaagcagaacaggatggattaagatgagccataactggggtgcttcctaccaagcatttgcaa |
3183596 |
T |
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| Q |
125 |
cacttagtggccaaactctttctttcaagattacttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaa |
209 |
Q |
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|||| |||| ||| |||||||||||| | ||||||| ||||| || || || ||||| || || |||||||||||||||||||| |
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| T |
3183595 |
cactaggtggtcaagctctttctttcaggcttacttcatacaccactaaggagactattattgcatggaatgttgctccttccaa |
3183511 |
T |
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