View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3345_high_3 (Length: 434)
Name: NF3345_high_3
Description: NF3345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3345_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Complemental strand, 8181478 - 8181101
Alignment:
| Q |
13 |
atactagtcataatttgagattgtttctaaagtcttttgttggcatgctatatataaacttactctgggtagattattctcaatgagcttgcatggaccc |
112 |
Q |
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| T |
8181478 |
atactagtcataatttgagatggtttctaaagtcttttgttggcatgctatatataaacttactttaggttgatagttctcaatgagcttgcatggaccc |
8181379 |
T |
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| Q |
113 |
ttgatccaaatttaatttatatcaagaaacaaaagtagtaatccatagctatatgaatatatatgatgaaataatacattactagatagttgctagcttc |
212 |
Q |
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| T |
8181378 |
ttgatccaaatttaatttatatcaagaaacaaaagtagtaatccatagctatatgaatatatatgatgaaataatacattactagatagttgctagcttc |
8181279 |
T |
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| Q |
213 |
cttttggatgt-ttttcatataagaggttagacaatgtttcatttgttgaccatagccaaatagtactatgtcctaaagtgaacattaaactttaacaag |
311 |
Q |
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| T |
8181278 |
cttttggatgttttttcatataagaggttagacaatgtttcatttgttgaccatagccaaatagtactatgtcctaaagtgaacattaaactttaacaag |
8181179 |
T |
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| Q |
312 |
aataatgccacaacaaacacatgatgccaaacttacaataatgttaatatttggaaattgaagggtatacaaggtaac |
389 |
Q |
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| T |
8181178 |
aataatgccacaacaaacacatgatgccaaacttacaatcatgttaatatttggaaattgaagggtatacaaggtaac |
8181101 |
T |
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