View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3346_high_2 (Length: 422)
Name: NF3346_high_2
Description: NF3346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3346_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 51 - 413
Target Start/End: Original strand, 46635686 - 46636048
Alignment:
| Q |
51 |
gttatatcctatggtttccaccattgattttactcttcactttttagttgcttttatcatctattaatctgctacacttttgattctgggcttgattttc |
150 |
Q |
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| T |
46635686 |
gttatatcctatggtttccaccattgattttactcttcactttttagttgcttttatcatgtattaatctgctacacttttgattctgggtttgattttc |
46635785 |
T |
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| Q |
151 |
ttgtttgttactaatcaaaattcttgaggtggggtttttcatgtttatcgttttttcgtaaccatttacaaaacaatgtaacaattccatacggagagtt |
250 |
Q |
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| T |
46635786 |
ttgtttgttactattcaaaattcttgaggtggggtttttcatgtttatcgttttttcgtaaccatttacaaaacaatgtaacaattccatacggagagtt |
46635885 |
T |
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| Q |
251 |
tcatacttatagttttcaaatctaaattcttttgttaacttgtatgatgctttcaaaaaccagtggctttggtacatatgaatggttggttggttggtga |
350 |
Q |
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| T |
46635886 |
tcatacttatagttttcaaatctaaattcttttgttaacttgtatgatgctttcaaaaaccagtggctttggtacatatgaatggttggttggttggtga |
46635985 |
T |
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| Q |
351 |
gtaacactatattacttttatgccttgttataattcatacttaaagtatcctcttgatgatgt |
413 |
Q |
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| T |
46635986 |
gtaacactatattacttttatgccttgttataattgatacttaaagtatgctcttgatgatgt |
46636048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 413
Target Start/End: Original strand, 46617117 - 46617351
Alignment:
| Q |
174 |
ttgaggtggggtttttcatgtttatcgttttttc----gtaaccatttacaaaacaatgtaacaattccatacggagagtttcatacttatagttttcaa |
269 |
Q |
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| T |
46617117 |
ttgaggtggatttttttatgtttatcgtttttttttttgtaaccatttagaaaacaaagtaacaattccacagggatagttggatactcatagttttgaa |
46617216 |
T |
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| Q |
270 |
atctaaattcttttgttaacttgtatgatgctttcaaaaaccagtggctttggtacatatgaatggttggttggttggtgagtaacactatattactttt |
369 |
Q |
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| T |
46617217 |
atctaaattctttcattaagtagaatgatgctttcaaaaaccagtggc-atggttaatatgaa--------tggttgatgagtaacactgctttactttt |
46617307 |
T |
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| Q |
370 |
atgccttgttataattcatacttaaagtatcctcttgatgatgt |
413 |
Q |
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| T |
46617308 |
atgcctcgtcacaactgatactttaagtatgctcttgatgatgt |
46617351 |
T |
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