View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3346_low_3 (Length: 344)
Name: NF3346_low_3
Description: NF3346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3346_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 28386244 - 28385928
Alignment:
| Q |
19 |
cctatcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgatt |
118 |
Q |
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| T |
28386244 |
cctatcaccacttggaagatccataatggcgcaatgctcctcaatgaagcggttggggatttcgttgagaagaatccaccggattgtattattgctgact |
28386145 |
T |
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| Q |
119 |
ccgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattccct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28386144 |
ccgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattctct |
28386045 |
T |
|
| Q |
219 |
tcgaacaaacaatttacttcatacagatgctgatgctgattcagattcaagttcatatgtcgttccaaatcttcatcatgataatattaccttgtgtagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28386044 |
tcgaacaaacaatttacttcatacagatgctgatgctgattcagattcaagttcatatgtcgttccaaatcttcatcatgataatattaccttgtgtagt |
28385945 |
T |
|
| Q |
319 |
aaaccaccacaggttct |
335 |
Q |
| |
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||||||||| ||||||| |
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| T |
28385944 |
aaaccaccaaaggttct |
28385928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 297
Target Start/End: Complemental strand, 12541582 - 12541314
Alignment:
| Q |
29 |
cttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctc |
128 |
Q |
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||||||| || || ||||| |||||||||||| ||| ||| ||| ||||| |||| ||| |||||||| |||||||| ||||| || || | | ||| |
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| T |
12541582 |
cttggaaaattcacaatggtgcaatgctcctccatggacccattgatgattttgttgtgaataatccacctgattgtatcattgccgactcttcttactc |
12541483 |
T |
|
| Q |
129 |
atgggctaatgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattcccttcgaacaaac |
228 |
Q |
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| T |
12541482 |
atggggtaatgacttggctcgtaagctacaagtacccaatttcacattcaatggatcctctctttttgctgtctccctcatggaatcccttagaaaaaac |
12541383 |
T |
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| Q |
229 |
aatttacttcatacagatgctgatgctgattcagattcaagttcatatgtcgttccaaatcttcatcat |
297 |
Q |
| |
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||||| |||||||| || ||||| ||||||| ||||||||||| ||||||||||||||| ||| |||| |
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| T |
12541382 |
aatttgcttcataccaattctgattctgattcggattcaagttcgtatgtcgttccaaattttcctcat |
12541314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 13449265 - 13449125
Alignment:
| Q |
24 |
caccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgca |
123 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||| || ||||| ||||||||||| ||||||| |||||||||||||||| || | || ||| | |
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| T |
13449265 |
caccacttggaagatccatactggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacg |
13449166 |
T |
|
| Q |
124 |
ttctcatgggctaatgacttggcccacaagcttcaaatccc |
164 |
Q |
| |
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| | |||||| ||||||||||||| | ||| |||| ||||| |
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| T |
13449165 |
tacccatgggttaatgacttggccgataagtttcagatccc |
13449125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 13441106 - 13440829
Alignment:
| Q |
20 |
ctatcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattc |
119 |
Q |
| |
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|||| ||| ||||||||||||| |||||||||||||||| ||| | | ||| ||||||| | ||||| ||||||| |||||||| || | || || |
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| T |
13441106 |
ctatgacctcttggaagatccaccgtggcgcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatcatctccgactc |
13441007 |
T |
|
| Q |
120 |
cgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattccctt |
219 |
Q |
| |
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||||| | ||||||||||||||||||| || |||||||| ||||| || || || || ||||||| ||| || ||| | ||||| || | | ||||| |
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| T |
13441006 |
cgcatacccatgggctaatgacttggcgcataagcttcagatcccaaacctcacattcaatggattgtcactttttaccgtctctctcgtggaatccctc |
13440907 |
T |
|
| Q |
220 |
cgaacaaacaatttacttcatacagatgctgatgctgattcagattcaagttcatatgtcgttccaaatcttcatcat |
297 |
Q |
| |
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| | ||||||| ||||||||| | ||| || || |||||| ||||||||||| | ||| ||||||||| ||| |||| |
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| T |
13440906 |
caagcaaacaacttacttcattctgatactaattctgatttggattcaagttcctttgttgttccaaattttcctcat |
13440829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 13462281 - 13462229
Alignment:
| Q |
29 |
cttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttc |
81 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| ||| ||| ||||||| |
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|
| T |
13462281 |
cttggaagatccatcatggcgcaatgctcctccatggacccattgaggatttc |
13462229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 3416812 - 3416953
Alignment:
| Q |
23 |
tcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgc |
122 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||| || ||| ||| ||||||| || | || ||||||| |||||||| || | || || || |
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| T |
3416812 |
tcaccacttggaagatcaacaatggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgc |
3416911 |
T |
|
| Q |
123 |
attctcatgggctaatgacttggcccacaagcttcaaatccc |
164 |
Q |
| |
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|| | |||||| ||||||||||||||| |||||||||||||| |
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| T |
3416912 |
atacccatgggttaatgacttggcccagaagcttcaaatccc |
3416953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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