View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3347_high_2 (Length: 347)
Name: NF3347_high_2
Description: NF3347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3347_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 332
Target Start/End: Original strand, 8490696 - 8491021
Alignment:
| Q |
7 |
tcgaagaatatacatcaaaacggaatcagttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtcctt |
106 |
Q |
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| T |
8490696 |
tcgaagaatgtacatcaaaacggaatcggttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtcctt |
8490795 |
T |
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| Q |
107 |
caccaaagnnnnnnnngggacgcccatatgcttaaatgtcaatacatataccttatattttatctcatgtatccnnnnnnntatcacacaannnnnnnat |
206 |
Q |
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| T |
8490796 |
caccaaagaaaaaaaagggatgcccatatgcttaaatgtcaatacatataccttatattttatctcatgtatccaaaaaaatatcacacaatttttttat |
8490895 |
T |
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| Q |
207 |
aactaaaaacaacaatcattggccgacacttatgattcctttggatacaaacaaattgtttgttaagatgcttgatgatatacaagacaaagggaaacag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8490896 |
aactaaaaacaacaatcattggccgacacttatgattcctttggatacaaacaaattgtttgttaagatgcttgatgatatacaagacaaagggaaacag |
8490995 |
T |
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| Q |
307 |
tattgcttaccctcttcagttgttga |
332 |
Q |
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| T |
8490996 |
tattgcttaccctcttcagttgttga |
8491021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 8490427 - 8490529
Alignment:
| Q |
10 |
aagaatatacatcaaaacggaatcagttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtccttcac |
109 |
Q |
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|||||| |||||| | |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| | |||||||||||||||| |
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| T |
8490427 |
aagaatgtacatccagacggaatcagttttctaaaaagtgttgagggagaggtagctctaaaaattgaatgaacatttatggtacccttatgtccttcac |
8490526 |
T |
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| Q |
110 |
caa |
112 |
Q |
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||| |
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| T |
8490527 |
caa |
8490529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 8489909 - 8489962
Alignment:
| Q |
60 |
ggtagctctcaaaattgaatgaacatttatgattcccttatgtccttcaccaaa |
113 |
Q |
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||||||||||| |||||||| |||||||||||| || ||||||||||||||||| |
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| T |
8489909 |
ggtagctctcacaattgaattaacatttatgatgccgttatgtccttcaccaaa |
8489962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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