View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3347_high_3 (Length: 323)

Name: NF3347_high_3
Description: NF3347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3347_high_3
NF3347_high_3
[»] chr3 (2 HSPs)
chr3 (231-311)||(39484452-39484532)
chr3 (17-76)||(39484238-39484297)
[»] chr2 (1 HSPs)
chr2 (237-307)||(38955121-38955191)
[»] chr1 (1 HSPs)
chr1 (237-307)||(22964726-22964796)
[»] chr8 (1 HSPs)
chr8 (232-296)||(38442253-38442317)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 39484452 - 39484532
Alignment:
Q  231 cgctgaccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagctttgttc 311  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39484452 cgctggccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagctttgttc 39484532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 39484238 - 39484297
Alignment:
Q  17 aaaaatgtaattaaagtttcaacaattgacatcgacatatcacaaacaacacacatagct 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39484238 aaaaatgtaattaaagtttcaacaattgacatcgacatatcacaaacaacacacatagct 39484297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 38955121 - 38955191
Alignment:
Q  237 ccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagcttt 307  Q
    ||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||    
T  38955121 ccttctttacccatcctcctcctagcctgcgtttatacacaacacttcaacccaccaccaccatcaacttt 38955191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 22964796 - 22964726
Alignment:
Q  237 ccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagcttt 307  Q
    ||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  22964796 ccttctttacccaccctcctcctagcctgcgtttctacacaacacttcaacccaccaccaccatcaacttt 22964726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 38442253 - 38442317
Alignment:
Q  232 gctgaccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccacca 296  Q
    |||| |||| ||||||||||||||||||| | |||| |||| |||  ||||||||||||||||||    
T  38442253 gctggccttttttacctatcctcctcctaccctgcgcttctgcacaccacttcaacccaccacca 38442317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University