View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3347_high_7 (Length: 250)
Name: NF3347_high_7
Description: NF3347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3347_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 52397014 - 52396927
Alignment:
| Q |
9 |
gaagaatatatgaaacgtggctatcggtcttattttaccaaaaatggaccggtgcaaagatacatatacactgttctcacctgcttcg |
96 |
Q |
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| T |
52397014 |
gaagaaaatatgaaacgtggctattggtcttattttaccaaaaatggaccggtgcaaagatacacatacactgttctcacctgcttcg |
52396927 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 52396760 - 52396712
Alignment:
| Q |
199 |
atcaattatcatctataaatagataccagatagaacgtgcaacactttc |
247 |
Q |
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| T |
52396760 |
atcaattatcatctataaatagataccagatagaacgtgcaacactttc |
52396712 |
T |
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