View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3347_high_8 (Length: 245)
Name: NF3347_high_8
Description: NF3347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3347_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 38529588 - 38529456
Alignment:
| Q |
82 |
cacttacaaagattggcttacaagctgggcttgaatccttatattattgtacannnnnnnaagagtatattattgtactttaatatattcatttcgttgc |
181 |
Q |
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| T |
38529588 |
cacttataaagattggcttacaagtcgggcttttaa---tatattattgtacatttttttaagagtatattattgtactttaatatattcattttgttgc |
38529492 |
T |
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| Q |
182 |
ttaaaaatatcattgaatttctccaatccatcactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38529491 |
ttaaaaatatcattgaatttctccaatccatcactt |
38529456 |
T |
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