View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3347_low_5 (Length: 297)
Name: NF3347_low_5
Description: NF3347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3347_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 6356010 - 6356288
Alignment:
| Q |
1 |
acaccacagttcccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatttggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6356010 |
acaccacagttcccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatatggta |
6356109 |
T |
|
| Q |
101 |
aatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgatgagattaggatcacaatgttatagttcaaatgaggtgata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6356110 |
aatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgatgagattaggatcacaatgttatagttcaaatgaggtgata |
6356209 |
T |
|
| Q |
201 |
tttttattcaactactcaattacaacatggtggaatgcaattggtcacgtcttatgctaattttttattatgagtgatt |
279 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6356210 |
tttttattcaactactcatttacaacatggtggaatgcaattggtcacgtcttatgctaattttttattatgagtgatt |
6356288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 7463111 - 7463269
Alignment:
| Q |
1 |
acaccacagttcccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatttggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7463111 |
acaccacagttcccttcaacttttggcctctatcaaagagaccagttacccctgaaaacatctttgaatatgctttaaatatattacactatatttggta |
7463210 |
T |
|
| Q |
101 |
aatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttga |
159 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
7463211 |
aatgaaagaaatgcctgtgtcttgtaaccatgggggtgcttagtatctatagtagttga |
7463269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 6365514 - 6365599
Alignment:
| Q |
75 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgat |
160 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||| |||| |||| ||| || ||||||||||||||||||||| |
|
|
| T |
6365514 |
ttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgat |
6365599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 6373177 - 6373264
Alignment:
| Q |
75 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccatagggg-tggttagtatttatagtagttgatg |
161 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| | ||||||||||||||||| |||| || ||| ||||||||||| |||||| |
|
|
| T |
6373177 |
ttaaatgtattacactatctttgtcaaatgaaagaaatgtttgtgtcttgtaaccattggggatgcttactatttatagtacttgatg |
6373264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 6393093 - 6393179
Alignment:
| Q |
75 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgatg |
161 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||| ||| || || ||||||||| || |||||| |
|
|
| T |
6393093 |
ttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccatggggatgcttggtatttatactacttgatg |
6393179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 6412233 - 6412320
Alignment:
| Q |
75 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccat-aggggtggttagtatttatagtagttgatg |
161 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| | ||||||||||||||| | ||| || ||||||||||||||| |||||| |
|
|
| T |
6412233 |
ttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccttgtgggatgcttagtatttatagtacttgatg |
6412320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 6373611 - 6373685
Alignment:
| Q |
75 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttat |
150 |
Q |
| |
|
||||| |||||||| ||| ||||| ||||||||||| ||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
6373611 |
ttaaacgtattacaatatctttggctaatgaaagaaaagcttgtgtcttttaaccata-gggtggtttgtatttat |
6373685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University