View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3347_low_6 (Length: 252)
Name: NF3347_low_6
Description: NF3347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3347_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 40206460 - 40206686
Alignment:
| Q |
11 |
cataggtattattgttgaagagaatgttgttgagaatgattttcctaacaacaatgacagttaccattctgaagaactaaggatccctattaccaatgat |
110 |
Q |
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| T |
40206460 |
cataggtattaatgttgaagagaatgttgttgagaatgattttcctaacaacaatgacatttaccattctgaagaactaaggatccctattaccaatgat |
40206559 |
T |
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| Q |
111 |
gaatgtgatggaaatgaagaacaggtttcccctcggtttaattcaaatgcaaagtttgcaagttcacttagagataggaatgaaatttaatactttggat |
210 |
Q |
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| T |
40206560 |
gaatgtgatggaaatgaagaacaggttttccctctgtttaattcaaatgcaaagtttgcaagttcacttagagataggaatgaaatttgatactttggat |
40206659 |
T |
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| Q |
211 |
atattcaatgaagttgtgaggaactac |
237 |
Q |
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| T |
40206660 |
atattcaatgaagttgtgaggaactac |
40206686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 12011013 - 12010800
Alignment:
| Q |
23 |
tgttgaagagaatgttgttgagaatgattttcctaacaacaatgacagttaccattctgaagaactaaggatccctattacca---atgatgaatgtgat |
119 |
Q |
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| T |
12011013 |
tgttgaagagaatgttgctgagaatgattttcctaacgacaatgacagttaccattctaaagaactaaggagccatattagcatcgatgatgaaggtgat |
12010914 |
T |
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| Q |
120 |
ggaaatgaagaacaggtttcccctcggtttaattcaaatgcaaagtttg-caagttcacttagagataggaatgaaatttaatactttggatatattcaa |
218 |
Q |
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| T |
12010913 |
ggaaatggaagacatgttt-ccttcggtttaattcaaatgcaaagtttgtcaggttcacttggaactaggaatggaatttgaaactatggatatattcaa |
12010815 |
T |
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| Q |
219 |
tgaagttgtgaggaa |
233 |
Q |
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| T |
12010814 |
agaaactgtgaggaa |
12010800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 12004526 - 12004381
Alignment:
| Q |
23 |
tgttgaagagaatgttgttgagaatgattttcctaacaacaatgacagttaccattctgaagaactaaggatccctat---taccaatgatgaatgtgat |
119 |
Q |
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| T |
12004526 |
tgttgaagagaatgttgctgagaatgattttcctgacaa---tgacagttaccattctgaagaactaaggagccatattagtatcgatgatgaaggtaat |
12004430 |
T |
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| Q |
120 |
ggaaatgaagaacaggtttcccctcggtttaattcaaatgcaaagtttg |
168 |
Q |
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| T |
12004429 |
agaaatggaagacaagttttccttcagcttaattcaaatgcaaagtttg |
12004381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 19599807 - 19599582
Alignment:
| Q |
15 |
ggtattattgttgaagagaatgttgttgagaatgattttcctaacaacaatgacagttaccattctgaagaactaaggatccctatta---ccaatgatg |
111 |
Q |
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||||||| ||||||||| |||||||| || ||| ||||||||||| |||||||||| ||||||| ||||||||||| | |||||||| || |||||| |
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| T |
19599807 |
ggtattaatgttgaagaaaatgttgtggataataattttcctaacgacaatgacagctaccattatgaagaactaaa-agccctattaataccgatgatg |
19599709 |
T |
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| Q |
112 |
aatgtgatggaaatgaagaacaggtttcccctcggtttaattcaaatgcaaagtttgcaag-ttcacttagagataggaatgaaatttaatactttggat |
210 |
Q |
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|| ||||| |||||| | ||| |||| ||||| |||||||||||||||||||||| || ||||||| ||| ||||||| ||||||| ||||||||| |
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| T |
19599708 |
aaggtgatagaaatggaagacaagttttccctcaatttaattcaaatgcaaagtttgttaggttcacttggagttaggaattgaatttaaaactttggat |
19599609 |
T |
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| Q |
211 |
atattcaatgaagttgtgaggaactac |
237 |
Q |
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|||||||| |||| ||||||||||||| |
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| T |
19599608 |
atattcaaagaagatgtgaggaactac |
19599582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 39726184 - 39726079
Alignment:
| Q |
131 |
acaggtttcccctcggtttaattcaaatgcaaagtttgcaag-ttcacttagagataggaatgaaatttaatactttggatatattcaatgaagttgtga |
229 |
Q |
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|||||||| ||||| ||| ||||||||||||||||||| || ||||| | ||| || ||||||||||| | ||||||||||||||||| ||| |||||| |
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| T |
39726184 |
acaggttttccctcagttcaattcaaatgcaaagtttgttaggttcacatggagctacgaatgaaatttgaaactttggatatattcaaagaatttgtga |
39726085 |
T |
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| Q |
230 |
ggaact |
235 |
Q |
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|||||| |
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| T |
39726084 |
ggaact |
39726079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 39726233 - 39726191
Alignment:
| Q |
16 |
gtattattgttgaagagaatgttgttgagaatgattttcctaa |
58 |
Q |
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|||||| |||| |||||||||||||||||||||||||| |||| |
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| T |
39726233 |
gtattaatgttaaagagaatgttgttgagaatgatttttctaa |
39726191 |
T |
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