View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3348_high_1 (Length: 762)
Name: NF3348_high_1
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 1e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 247 - 409
Target Start/End: Original strand, 9371448 - 9371610
Alignment:
| Q |
247 |
ggaagatttgttttgctttaaaaaatttaaaattgtgatgcgccacttttttacatggactatacgataatcgatgtaaaaaagtttcataaaatctgta |
346 |
Q |
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| T |
9371448 |
ggaagatttgttttgctttaaaaaatttaaaattgtgatgcgccacttttttacatggactatacgataatcgatgtaaaaaagtttcataaaatctgta |
9371547 |
T |
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| Q |
347 |
ttttgtattaatgggagtataccttatagtactctttgattaatatatgctactttatttgtt |
409 |
Q |
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| T |
9371548 |
ttttgtattaatgggagtataccttatagtactctttgattaatatatgctactttatttgtt |
9371610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 564 - 741
Target Start/End: Original strand, 9371800 - 9371980
Alignment:
| Q |
564 |
tgaacataaaatatcatgtacgagaatattctcccatctaatgctattataaacaagttttcacagaaagcttattttaccctgtaaattcgtagacttt |
663 |
Q |
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| T |
9371800 |
tgaacataaaatatgatgtacgagaatattctcccatctaatgctattataaacaagttttcacacaaagcttattttaccctgtaaattcgtagatttt |
9371899 |
T |
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| Q |
664 |
cttgttgaggtcatgttgagaattgtcttaaaattgatgat---aggttcgtaaaaaatcgtgatacgatttggagaaatc |
741 |
Q |
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| T |
9371900 |
cttgttgaggtcatgttgaaaattgtcttaaaattgatgattaaaggttcgtaaaaaatcgtgacacgatttggagaaatc |
9371980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 9371220 - 9371346
Alignment:
| Q |
12 |
tcatcaagaatatggagtggaaaagtttgtggtcaaatgtaatatagggtttctttgctcatttcatatatagtttgcaaatcctacttagtagattatt |
111 |
Q |
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| T |
9371220 |
tcatcaagaatatggagtggaaaggtttgtggtcaaatgtaatatagggtttctttgctcatttcatatatagtttgcaaatcctacttagtatattatt |
9371319 |
T |
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| Q |
112 |
ggtaagtaggttaaataatcagttatg |
138 |
Q |
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| T |
9371320 |
ggtaagtagtttaaataatcagttatg |
9371346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 391 - 477
Target Start/End: Original strand, 9371620 - 9371706
Alignment:
| Q |
391 |
atatgctactttatttgttaaaaataatcatcactgactcagcatgactatacaagagatactagttgtattcgaaagtaagcaaag |
477 |
Q |
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| T |
9371620 |
atatgctactttatttgttaaaaataatcatcactgactcagcatgactatgcaagagatactagttgtattcgaaagtaggcaaag |
9371706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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