View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3348_high_12 (Length: 351)
Name: NF3348_high_12
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 34980416 - 34980721
Alignment:
| Q |
16 |
acaagatacatttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34980416 |
acaagatacatttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcag |
34980515 |
T |
|
| Q |
116 |
gttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34980516 |
gttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgatttgtgtcgaaatcaaaatccaatgtcaa |
34980615 |
T |
|
| Q |
216 |
caaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgt |
315 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34980616 |
caaaggaagtttttggacaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgt |
34980715 |
T |
|
| Q |
316 |
ggcaag |
321 |
Q |
| |
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|||||| |
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| T |
34980716 |
ggcaag |
34980721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 27 - 313
Target Start/End: Original strand, 34992829 - 34993115
Alignment:
| Q |
27 |
ttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatc |
126 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34992829 |
ttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattctcgataatattgaatatttgaaacaatttagtcaggttgatgcatc |
34992928 |
T |
|
| Q |
127 |
gttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtt |
226 |
Q |
| |
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||||| | ||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| ||| ||||||||||||||||||| ||| |
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| T |
34992929 |
attaatggagcttgttaagatggttgaagttggagatcttcaaacactgcctagttttgattcgtgtcgaatccaagatccaatgtcaacaaaggacgtt |
34993028 |
T |
|
| Q |
227 |
tttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggat |
313 |
Q |
| |
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||||| |||||||| | |||||||| ||| ||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
34993029 |
tttggacaaggtttgcagattgaaggttcacgggatatggcattgattaagataagtccaactaaactagttgaagtacttatggat |
34993115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 317
Target Start/End: Original strand, 34984877 - 34985164
Alignment:
| Q |
27 |
ttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatc |
126 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| || |||||||||||||||||||| | ||||||||| | |
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| T |
34984877 |
ttgcagaaaacaat---gtatggcatcaacatagggaacataggtacgaaattctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaac |
34984973 |
T |
|
| Q |
127 |
gttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtt |
226 |
Q |
| |
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||| | | ||||||||| |||||||||||||||| ||| ||||| ||||||||||||||| ||||||||| |||||| |||||| |||| ||||||| |
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| T |
34984974 |
attattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtt |
34985073 |
T |
|
| Q |
227 |
tttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
317 |
Q |
| |
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|||| |||||||| | |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34985074 |
tttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaactaaactagttgaattacttatggatgtgg |
34985164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 45 - 317
Target Start/End: Complemental strand, 27542756 - 27542482
Alignment:
| Q |
45 |
tatggcatcaacataaggaacataggtacgaaattcttgat--tatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgtt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| | ||| |||||||||| | ||||| | ||| | |
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| T |
27542756 |
tatggcatcaacataaggaacataggtacgaaattctcgatgatatattgaaaatttgaaacaatatggtcgggttgatgcaacattaatggagattaat |
27542657 |
T |
|
| Q |
143 |
aagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttc |
242 |
Q |
| |
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| | |||||||||||||||| || ||||| ||||||||||||||| ||||||||| ||||||||||||| |||| | |||||||||| |||||||| | |
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| T |
27542656 |
aggttggttgaagttggagaattttaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatgaaagtttttggacaaggtttgc |
27542557 |
T |
|
| Q |
243 |
cgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
317 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
27542556 |
agattgaagcttttcggaacatggcattgattaagataagtccaactaaactagttgaaatacttatggatgtgg |
27542482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 43 - 317
Target Start/End: Original strand, 27582957 - 27583233
Alignment:
| Q |
43 |
tgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgtt |
142 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||| ||| |||||||||| | | ||| | |||||| |
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| T |
27582957 |
tgtatggcatcaacataaggaacataagtacgaaattctcgataatatttaatatttgaaacaatttggtcgggttgatgcaacatcaatggagattgtt |
27583056 |
T |
|
| Q |
143 |
aagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttc |
242 |
Q |
| |
|
| | |||||| ||||||||| ||| ||||| ||||||||||| ||| ||||||||| ||||||||||||| |||| |||| ||||||| |||||||| |
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|
| T |
27583057 |
aggttggttggagttggagagcttcaaactttacctagttttaatttgtgtcgaaaccaaaatccaatgtacacaatggaaatttttggacaaggtttgt |
27583156 |
T |
|
| Q |
243 |
cgattgaagcttctcgggacatggaa--ttgattaagataagaccaactaaactagttgaattacttatggatgtgg |
317 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||| ||| | |||||||||||| |||||||||||||||||||| |
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|
| T |
27583157 |
tgattgaagcttctcgagacatggcatgttgattaatatatgttcaactaaactagatgaattacttatggatgtgg |
27583233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 317
Target Start/End: Complemental strand, 27581647 - 27581375
Alignment:
| Q |
43 |
tgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgtt |
142 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||| ||| |||||||||| | ||||| | ||| || |
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| T |
27581647 |
tgtatggcatcaacataaggacaataggtacaaaattctccatgatattgaatatttgaaacaatttggtcgggttgatgcaacattaatggagattatt |
27581548 |
T |
|
| Q |
143 |
aagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttc |
242 |
Q |
| |
|
| | |||||||||||||||| ||| ||||| ||||||||||||||| ||| ||||||||||||||||| |||| |||||||| ||| |||||||| |
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|
| T |
27581547 |
aggttggttgaagttggagagcttcaaactttacctagttttgatt--tgtgaaaatcaaaatccaatgtacacaatggaagtttctggacaaggtttat |
27581450 |
T |
|
| Q |
243 |
cgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
317 |
Q |
| |
|
||||||||| || ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
27581449 |
agattgaagcctcgtgggacatggcattggttaagataattccaactaaactagttgaattacttatggatgtgg |
27581375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 27543618 - 27543854
Alignment:
| Q |
25 |
atttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgca |
124 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||| |
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|
| T |
27543618 |
atttgcagaaaacaat---gtatgacatcaacataaggaacataggtacgaaattctcgatgatattgaatatttgaaacaatttggttgggttgatgca |
27543714 |
T |
|
| Q |
125 |
tcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaag |
224 |
Q |
| |
|
| ||||| | ||||||| | || ||| ||||||||| ||| ||||| ||||||||||||||| ||||||||| ||||||||||||| |||| ||||| |
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|
| T |
27543715 |
acattaatggagattgttaggttgcttggagttggagagcttcaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatggaag |
27543814 |
T |
|
| Q |
225 |
tttttggccaaggttttccgattgaagcttctcgggacat |
264 |
Q |
| |
|
||||||| || ||||| | |||||||||||||| |||||| |
|
|
| T |
27543815 |
tttttggacatggtttgcagattgaagcttctcaggacat |
27543854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 27543859 - 27543892
Alignment:
| Q |
284 |
ccaactaaactagttgaattacttatggatgtgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27543859 |
ccaactaaactagttgaattacttatggatgtgg |
27543892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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