View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3348_high_15 (Length: 267)
Name: NF3348_high_15
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 36680892 - 36681139
Alignment:
| Q |
1 |
gttggtaccatagtcatagaaggccttctcatccacccataatttcacagcagcagcggcattcatttgggggtcagaaccctccgcaaggttctcgcca |
100 |
Q |
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| T |
36680892 |
gttggtaccatagtcatagaaggccttctcatccacccataatttcacagcatcagcggcattcatttgggggtcagaaccctccgcaaggttctcgcca |
36680991 |
T |
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| Q |
101 |
taaggcccttgggagtgcaccatttcgcaggtttcgtgcttcgatttagcatagttcatggcataggaagcaagggtttcgttccacacgagtgggccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36680992 |
taaggcccttgggagtgcaccatttcgcaggtttcgtgcttcgatttagcatagttcatggcataggaggcaagggtttcgttccacacgagtgggccaa |
36681091 |
T |
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| Q |
201 |
caccaacctcggcacgagccttgttgtgcacgtctaggtagtcttgag |
248 |
Q |
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| T |
36681092 |
caccaacctcggcacgagccttgttgtgcacgtctaggtagtcttgag |
36681139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 36690752 - 36690883
Alignment:
| Q |
86 |
gcaaggttctcgccataaggcccttgggagtgcaccatttcgcaggtttcgtgcttcgatttagcatagttcatggcataggaagcaagggtttcgttcc |
185 |
Q |
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|||| |||||||||||||||||| |||| || ||||| ||||||| || ||||| |||| || ||||| ||||||||| |||| ||| || |||| |
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| T |
36690752 |
gcaaagttctcgccataaggcccaccggagggctccattacgcaggtatcaatcttcgttttaacaaagttcctggcataggctgcaatggtgtcattcc |
36690851 |
T |
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| Q |
186 |
acacgagtgggccaacaccaacctcggcacga |
217 |
Q |
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| T |
36690852 |
acttgagtggaggaacaccaacctcggcacga |
36690883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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