View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3348_high_18 (Length: 241)
Name: NF3348_high_18
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 15952697 - 15952486
Alignment:
| Q |
19 |
aggacctgcattgggttctgttctcttgcgggtaatggtgtatacaatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15952697 |
aggacctgcattgggttctgttctcttgcgggtaatggtgtatactatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatct |
15952598 |
T |
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| Q |
119 |
attatttctttgcaaggaattcaactaaagcatggtattctcttg----ggggttgtcttctgtgtccaactgaccatgaagccatgtttgcagatcttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15952597 |
attatttctttgcaaggaattcaactaaagcatggtattctcttgggccggggttgtcttctgtgtccaactgaccatgaagccatgtttgcagatcttt |
15952498 |
T |
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| Q |
215 |
gctacttctctg |
226 |
Q |
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|||||||||||| |
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| T |
15952497 |
gctacttctctg |
15952486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 29924795 - 29924950
Alignment:
| Q |
32 |
ggttctgttctcttgcgggtaatggtgtatacaatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatctattatttctttgc |
131 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29924795 |
ggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatctattatttctttgc |
29924894 |
T |
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| Q |
132 |
aaggaattcaactaaagcatggtattctcttgggggttgtcttctgtgtccaactg |
187 |
Q |
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| T |
29924895 |
aaggaattcaactaaagcatggtattctcttgggggctgtcttctgtgtgcaactg |
29924950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 29926669 - 29926703
Alignment:
| Q |
192 |
tgaagccatgtttgcagatctttgctacttctctg |
226 |
Q |
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| T |
29926669 |
tgaagccatgtttgcagatctttgctacttctctg |
29926703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 10032805 - 10032629
Alignment:
| Q |
32 |
ggttctgttctcttgcgggtaatggtgtatacaatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatctattatttctttgc |
131 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10032805 |
ggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacaacaacgtttttagggcttttaatcctattcacatctattatttctttgc |
10032706 |
T |
|
| Q |
132 |
aaggaattcaactaaagcatggtattctcttgggggttgtcttctgtgtccaactgaccatgaagccatgtttgcagatcttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |
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| T |
10032705 |
aaggaattcaactaaagcatggtattctcttgggggttgtc------gtccaactagctctgaagccatgtttgcagatcttt |
10032629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 185
Target Start/End: Original strand, 1636792 - 1636945
Alignment:
| Q |
32 |
ggttctgttctcttgcgggtaatggtgtatacaatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatctattatttctttgc |
131 |
Q |
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|||| ||||||||||| |||| || ||||||||||| ||||||||||||| || || || ||||| || ||||| ||||| ||||| |||||||| |
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| T |
1636792 |
ggttttgttctcttgccggtatcgggatatacaatcttctcaaatatgacagaagtgtcttgagggcattcaatcccattcatatctactatttcttcaa |
1636891 |
T |
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| Q |
132 |
aaggaattcaactaaagcatggtattctcttgggggttgtcttctgtgtccaac |
185 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
1636892 |
gaggaactcaactaaagcatggtattctctcgggggttgtcttctgtgtgcaac |
1636945 |
T |
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