View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3348_high_2 (Length: 615)
Name: NF3348_high_2
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Original strand, 42014231 - 42014603
Alignment:
| Q |
11 |
cagagacagagaagaacccttaacattcacaatgccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcaccgat |
110 |
Q |
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|||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42014231 |
cagagaaagagaagaatctttaacattcacaatcccatcatcttcctctcattcctcaccgatcaccgtctctgacacactcgatagttacctcaccgac |
42014330 |
T |
|
| Q |
111 |
ccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttactgatgttgagtttggattctcaagacctgattttcgacaaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
42014331 |
ccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttgccgatgttgagtttggattctcaagacctgattttcgacaaa |
42014430 |
T |
|
| Q |
211 |
gttctcttgttggtactgttcagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttggcctcctaggattgaagctgctgagtttga |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014431 |
gttctcttgttggtactgttgagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttggcctcctaggattgaagctgctgagtttga |
42014530 |
T |
|
| Q |
311 |
tcggttgcctaggttgctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagtt |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014531 |
tcggttgcctaggttgctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagtt |
42014603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 517 - 601
Target Start/End: Original strand, 42014953 - 42015037
Alignment:
| Q |
517 |
gggggtgatgaattgtaaatgaatgatatttgtgaggttttaacaagttaactgtatgatgtgaaattaatgctagttggatgtg |
601 |
Q |
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| T |
42014953 |
gggggtgatgaattgtaaatgaatgatatttgtgaggttttaacaagttaactgtatgatgtgaaattaatgctagttggatgtg |
42015037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Original strand, 1247459 - 1247831
Alignment:
| Q |
11 |
cagagacagagaagaacccttaacattcacaatgccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcaccgat |
110 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1247459 |
cagagaaagagaagaacccttaacattcacaatcccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcactgac |
1247558 |
T |
|
| Q |
111 |
ccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttactgatgttgagtttggattctcaagacctgattttcgacaaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1247559 |
ccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttgctgatgttgagtttggattctcaagacctgattttcggcaaa |
1247658 |
T |
|
| Q |
211 |
gttctcttgttggtactgttcagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttggcctcctaggattgaagctgctgagtttga |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1247659 |
gttctcttgttggtactgttgagttgtacgaacgacacgtgtttctatgttataagaatcccagattttggcctcctaggattgaagctgctgagtttga |
1247758 |
T |
|
| Q |
311 |
tcggttgcctaggttgctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagtt |
383 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1247759 |
tcggttgcctaggttgctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagtt |
1247831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 517 - 601
Target Start/End: Original strand, 1248181 - 1248265
Alignment:
| Q |
517 |
gggggtgatgaattgtaaatgaatgatatttgtgaggttttaacaagttaactgtatgatgtgaaattaatgctagttggatgtg |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248181 |
gggggtgatgaattgtaaatgaatgatatttgtgaggttttaacaagttaactgtatgatgtgaaattaatgctagttggatgtg |
1248265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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