View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3348_high_24 (Length: 211)
Name: NF3348_high_24
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 39846414 - 39846235
Alignment:
| Q |
15 |
cagagaaaggcggggagtataaatcgacgatataagattctggcaactctaatattggcgccaaaatgttcagtggccggtggggtaggtggagcacagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39846414 |
cagagaaaggcggggagtataaatcgacgatataagattccggcaactctaatattgccgccaaaatgttcagtggccggtggggtaggtggagcacagg |
39846315 |
T |
|
| Q |
115 |
cttaggtggaatggttaaatgcataaattatgtggccctaaaataaatactttgatcgaaacgactaatatgtacttatt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39846314 |
tttaggtggaatggttaaatgcataaattatgtggccgtaaaataaatactttgatcgaaacgactaatatgtacttatt |
39846235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 35163193 - 35163014
Alignment:
| Q |
15 |
cagagaaaggcggggagtataaatcgacgatataagattctggcaactctaatattggcgccaaaatgttcagtggccggtggggtaggtggagcacagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35163193 |
cagagaaaggcggggagtataaatcgacgatataagattccggcaactctaatattgccgtcaaaatgttcagtggccggtggggaaggtggagcacagg |
35163094 |
T |
|
| Q |
115 |
cttaggtggaatggttaaatgcataaattatgtggccctaaaataaatactttgatcgaaacgactaatatgtacttatt |
194 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35163093 |
ttggggtggaatggttaaatgcataaattatgtggccgtaaaataattactttgatcgaaacgactaatatgtacttatt |
35163014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 44796927 - 44797106
Alignment:
| Q |
15 |
cagagaaaggcggggagtataaatcgacgatataagattctggcaactctaatattggcgccaaaatgttcagtggccggtggggtaggtggagcacagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44796927 |
cagagaaaggcggggagtataaatcgacgatataagattccggcaactctaatattgccgccaaaatgttcagtggccggtggggaaggtggagcacagg |
44797026 |
T |
|
| Q |
115 |
cttaggtggaatggttaaatgcataaattatgtggccctaaaataaatactttgatcgaaacgactaatatgtacttatt |
194 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
44797027 |
ttggggtggaatggttaaatgcataaattatgtggccgtaaaataattactttgatcgaaaccactaatatgtacttatt |
44797106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 39841362 - 39841186
Alignment:
| Q |
15 |
cagagaaaggcggggagtataaatcgacgatataagattctggcaactctaatattggcgccaaaatgttcagtggccggtggggtaggtggagcacagg |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39841362 |
cagagaaaggcggggagtataaatccacgatataagattccggcaactctaatattgccgccaaaatgttcagtggccggtggggaaggtggagcacagg |
39841263 |
T |
|
| Q |
115 |
cttaggtggaatggttaaatgcataaattatgtggccctaaaataaatactttgatcgaaacgactaatatgtactta |
192 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39841262 |
ttggggtggaatggttaaatgcataaattatgtggccgtaaaataaatactttgatcgaaacgact-atatgtactta |
39841186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University