View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3348_high_6 (Length: 453)

Name: NF3348_high_6
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3348_high_6
NF3348_high_6
[»] chr4 (1 HSPs)
chr4 (7-286)||(37642663-37642959)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 37642959 - 37642663
Alignment:
Q  7 acatcatcatcatt-gatacggtcaatgtaatgtactataggttttgattcgtatttatttctaactctagagaataaaagaccgtgtatcaaactttaa 105  Q
    ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  37642959 acatcataatcatttgataaggtcaatgtaatgtactataggttttgattcgtatttatttctaactctagagaataaaagaccgtgtatcaaactccaa 37642860  T
Q  106 tgcaccaaagttcatggataagccacattaggttaaatcagttttatgattttaatgctttctaatattctatcatagtgacacacaattattagctaa- 204  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37642859 tgcaccaaagttcatggataagccgcattaggttaaatcagttttatgattttaatgctttctaatattctatcatagtgacacacaattattagctaaa 37642760  T
Q  205 ---------------accgcgctcatggtgtttctttcggtcatcggttgggcacataaagtatgacataagctttttggcacctttaaattaagaa 286  Q
                   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37642759 ccaacatagccttctaccgcgctcatggtgtttctttcgctcatcggttgggcacataaagtatgacataagctttttggcacctttaaattaagaa 37642663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University