View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3348_high_7 (Length: 420)
Name: NF3348_high_7
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 3 - 404
Target Start/End: Original strand, 50967323 - 50967724
Alignment:
| Q |
3 |
agaagaaccataggttattgtcaaatcaattgactttttctttttcaagtgttatggctccaagtatttgtaacttgacaaactcatttacttgtatgaa |
102 |
Q |
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| T |
50967323 |
agaagaatcataagttattgtcaaatcaattgactttttctttttcaagtgttatggctccaagtatttgtaacttgacaaactcatttacttgtatgaa |
50967422 |
T |
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| Q |
103 |
attatggatgaataaaaaattatttcatcaaagaatattaatatattatcattaagtgatcagacagaatcataatgtcactgcagtttatatcaactgt |
202 |
Q |
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| T |
50967423 |
attatggatgaataaaaaattatttcatcaaagaatattaatatattatcattaagtgatcagacagaatcataatgtcactgcagtttatatcaactgt |
50967522 |
T |
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| Q |
203 |
acaaaagctgctgaaaactgtattgtatcaaataaaacatgtcgaaaccgttataagtgaaattatcaatttggagagtttacactttaattcaattaca |
302 |
Q |
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| T |
50967523 |
acaaaagctgctgaaaactgtattgtatcaaataaaacatgtcgaatccgttataagtgaaattatcaatttggagagtttacactttaattcaattaca |
50967622 |
T |
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| Q |
303 |
agattgggagaaagggaggctagttgtaaaaggtattaatgcccggagaagcatgtagttggcaacaataataaatccacaattagcataatacacactg |
402 |
Q |
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| T |
50967623 |
agattgggagaaagggaggctagttgtaaaaggtattaatgcccggagaagcatgtagttggcaacaataataaatccacaattagcataatacacactg |
50967722 |
T |
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| Q |
403 |
ca |
404 |
Q |
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| T |
50967723 |
ca |
50967724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 50997461 - 50997547
Alignment:
| Q |
149 |
tatcattaagtgatcagacagaatcataatgtcactgcagtttatatcaactgtacaaaagctgctgaaaactgtattgtatcaaat |
235 |
Q |
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| T |
50997461 |
tatcattgaatgattaaacaaaatcataatgtcacagcagtttatatcatttgtacaaaagttgctgaaaactgtattatatcaaat |
50997547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 50997344 - 50997425
Alignment:
| Q |
16 |
gttattgtcaaatcaattgactttttctttttcaagtgttatggctccaagtatttgtaacttgacaaactcatttacttgtatg |
100 |
Q |
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| T |
50997344 |
gttattgccaaatcaactgactttttttct---aagagctatggctccaaatatttgtaagttgacaaactcatttactagtatg |
50997425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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