View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3348_high_9 (Length: 400)
Name: NF3348_high_9
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 34569709 - 34569338
Alignment:
| Q |
13 |
atcactatgaagataaaattcactcccacgtttgcaaagttttgaagccttatgatatgaatatcaagtcaaaaacccttttcaatctcttgaggaaatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34569709 |
atcactatgaagataaaattcactcccacgtttgcaaagttttgaagccttatgatatgaatatcaagtcaaaaacccttttcaatctcttgaggaaatg |
34569610 |
T |
|
| Q |
113 |
agttatgcgttatgacttcagtttgatccactatgaatgaaaactatatttttaaacactttcaatagcacaaatgcatgaattcatagtttgacacgtc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34569609 |
agttatgcgttatgacttcagtttgatccactatgaatgaaaactatatttttaaacactttcaatatcacaaatgcatgaattcatagtttgacacgtc |
34569510 |
T |
|
| Q |
213 |
ttgaattcagcaaatcaacatagcattttctttgttgcaaaaggttcaacgataacgttgtaaaacggaccttactatttaaacacgagttttactttgt |
312 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
34569509 |
ttgaattcagcaagtcaacatagcattttctttgttgcaaaaggttcaacgataacgttgtaaaacggatcttactatttaaacatgagttttactttgt |
34569410 |
T |
|
| Q |
313 |
aaaccctaagctttcagtgttaatagaaaggcactgaagccactctgcagctgcagttggagacgtagacac |
384 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34569409 |
aaaccctaagctttcagtgataatagaaaggcactgaagccactctgcagctgcagttggagacgtagacac |
34569338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University